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Tan0005118 (gene) of Snake gourd v1 genome

Gene IDTan0005118
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG03:63405824..63406132
RNA-Seq ExpressionTan0005118
SyntenyTan0005118
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012472296.1 PREDICTED: uncharacterized protein LOC105789469 [Gossypium raimondii]1.9e-0428.28Show/hide
Query:  DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE
        DAA D  + R+  G++VR+ NR +L + + +H   ++P  +EA   L  ++L  RLG +KL +  DS T +          + I   I D+  ++ + +
Subjt:  DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE

XP_018831463.1 uncharacterized protein LOC108999120 [Juglans regia]1.4e-0433.33Show/hide
Query:  RTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE
        + G+GVV+RD   +L++A S + +   NP+  E L +L GLQL   LG+SKL + SD +  V  +N    +++   + I +   L + F+
Subjt:  RTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE

XP_018844582.1 uncharacterized protein LOC109008805 [Juglans regia]1.1e-0432.32Show/hide
Query:  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKF
        +D A  + Q R GVG+++RD N  +L+  S       +PA  E L +L GLQL   LG  +L + SDSL  V  +  +    + + N + ++  L ++F
Subjt:  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKF

XP_021719894.1 uncharacterized protein LOC110687544 [Chenopodium quinoa]1.1e-0437.36Show/hide
Query:  DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDV
        DA C  + G  G+G V+RD N  LL   +  H T  +P C+EAL +   LQLA RLG+S++ + SD++  V  ++      A IH   +D+
Subjt:  DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDV

XP_038682992.1 uncharacterized protein LOC119983379 [Tripterygium wilfordii]1.9e-0433.66Show/hide
Query:  DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFES
        DAA      RTG+G+V RD    +L + + V  T ++P  +EAL  L  ++L   LG+++L    DS+  V  ING + T A     I ++  L   F S
Subjt:  DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFES

Query:  Y
        +
Subjt:  Y

TrEMBL top hitse value%identityAlignment
A0A1U8P8B0 uncharacterized protein LOC1079562323.1e-0530.3Show/hide
Query:  DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE
        DAA D  + R+  G++VR+ NR +L + + +H    +P  +EA   L  ++L  RLG +KL +  DS T +          + I   I D+  L+ +F+
Subjt:  DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE

A0A2I4FII8 uncharacterized protein LOC1089991207.0e-0533.33Show/hide
Query:  RTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE
        + G+GVV+RD   +L++A S + +   NP+  E L +L GLQL   LG+SKL + SD +  V  +N    +++   + I +   L + F+
Subjt:  RTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE

A0A2I4GL10 uncharacterized protein LOC1090088055.3e-0532.32Show/hide
Query:  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKF
        +D A  + Q R GVG+++RD N  +L+  S       +PA  E L +L GLQL   LG  +L + SDSL  V  +  +    + + N + ++  L ++F
Subjt:  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKF

A0A2P6RG15 RNase H domain-containing protein9.1e-0540.24Show/hide
Query:  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTI
        MDAA D      G+ +V+RDP+ R++V  S+  D   +P  +EAL I  GL  A  L  S LH+ SDSLT ++ +   L T+
Subjt:  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTI

A0A5C7HDG5 RNase H domain-containing protein1.6e-0435.53Show/hide
Query:  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMIN
        +DAA D+ +GR G+G+++RD N  +L + +   D F  P  +EA+ IL GL  A  +G     + SD+   V ++N
Subjt:  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCAGCGTGTGATGAGTCTCAAGGGAGAACAGGTGTTGGAGTTGTTGTTCGAGATCCAAATCGACGCTTGTTGGTGGCTATGTCTAATGTCCATGACACTTTCAT
CAATCCGGCTTGCTCAGAAGCATTGGTCATTCTTGATGGATTGCAGCTTGCTGAGCGCTTAGGATACTCTAAGCTACACATTTTCTCGGACTCATTAACCAATGTGGCTA
TGATCAATGGGATGCTACGAACGATTGCTCAAATCCACAACTACATCAATGATGTTTTATTTCTACGTCGAAAGTTTGAGTCATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCAGCGTGTGATGAGTCTCAAGGGAGAACAGGTGTTGGAGTTGTTGTTCGAGATCCAAATCGACGCTTGTTGGTGGCTATGTCTAATGTCCATGACACTTTCAT
CAATCCGGCTTGCTCAGAAGCATTGGTCATTCTTGATGGATTGCAGCTTGCTGAGCGCTTAGGATACTCTAAGCTACACATTTTCTCGGACTCATTAACCAATGTGGCTA
TGATCAATGGGATGCTACGAACGATTGCTCAAATCCACAACTACATCAATGATGTTTTATTTCTACGTCGAAAGTTTGAGTCATACTAA
Protein sequenceShow/hide protein sequence
MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFESY