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Tan0005136 (gene) of Snake gourd v1 genome

Gene IDTan0005136
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG08:39550956..39562284
RNA-Seq ExpressionTan0005136
SyntenyTan0005136
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054351.1 reverse transcriptase [Cucumis melo var. makuwa]7.8e-1544.96Show/hide
Query:  PRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQ
        PRGNR S++ + L + + +        LSTLSVLRDN+ VVEI+L VPD L  SAESS S+      LY   ++ +  C   N        V+ V     
Subjt:  PRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQ

Query:  VFLRGNNVCWLHAVFRAKLAGGSAGGVIT
          +RG+NVCWLHAVFRA+ AGG  GGV T
Subjt:  VFLRGNNVCWLHAVFRAKLAGGSAGGVIT

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]7.8e-1546.51Show/hide
Query:  PRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQ
        PRGNR S++ + L + + +        LSTLSVLRDNNVV  IEL VPDILP SAESS S+      LY   ++ +  C   N        V+ V     
Subjt:  PRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQ

Query:  VFLRGNNVCWLHAVFRAKLAGGSAGGVIT
          +RG++VCWLHAVFRAK  GG  GGV T
Subjt:  VFLRGNNVCWLHAVFRAKLAGGSAGGVIT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]5.9e-1546.09Show/hide
Query:  RGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQV
        RGNRSS+++  L   + +        LSTLSVLRDN+ VVEIEL VPD LP SAESS S+      LY   ++ +  C   N        V+ V      
Subjt:  RGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQV

Query:  FLRGNNVCWLHAVFRAKLAGGSAGGVIT
         +RG++VCWLHAVFRAK  GG  GGV T
Subjt:  FLRGNNVCWLHAVFRAKLAGGSAGGVIT

TYK01618.1 uncharacterized protein E5676_scaffold451G002250 [Cucumis melo var. makuwa]5.9e-1543.61Show/hide
Query:  FDFIDRPRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVNYV-------YQ
        F+ +  PR NR S++   L + + +        LSTLSVLRDN+ VVEIELLVP+ LP SAESS S+      LY   ++ +  C   N V       ++
Subjt:  FDFIDRPRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVNYV-------YQ

Query:  VKQSQQVFLRGNNVCWLHAVFRAKLAGGSAGGV
        V       +RG +VCWLHAVF+AK AGG  GGV
Subjt:  VKQSQQVFLRGNNVCWLHAVFRAKLAGGSAGGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]5.9e-1546.09Show/hide
Query:  RGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQV
        RGNRSS+++  L   + +        LSTLSVLRDN+ VVEIEL VPD LP SAESS S+      LY   ++ +  C   N        V+ V      
Subjt:  RGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQV

Query:  FLRGNNVCWLHAVFRAKLAGGSAGGVIT
         +RG++VCWLHAVFRAK  GG  GGV T
Subjt:  FLRGNNVCWLHAVFRAKLAGGSAGGVIT

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein3.8e-1546.51Show/hide
Query:  PRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQ
        PRGNR S++ + L + + +        LSTLSVLRDNNVV  IEL VPDILP SAESS S+      LY   ++ +  C   N        V+ V     
Subjt:  PRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQ

Query:  VFLRGNNVCWLHAVFRAKLAGGSAGGVIT
          +RG++VCWLHAVFRAK  GG  GGV T
Subjt:  VFLRGNNVCWLHAVFRAKLAGGSAGGVIT

A0A5A7V9N3 Reverse transcriptase2.9e-1546.09Show/hide
Query:  RGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQV
        RGNRSS+++  L   + +        LSTLSVLRDN+ VVEIEL VPD LP SAESS S+      LY   ++ +  C   N        V+ V      
Subjt:  RGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQV

Query:  FLRGNNVCWLHAVFRAKLAGGSAGGVIT
         +RG++VCWLHAVFRAK  GG  GGV T
Subjt:  FLRGNNVCWLHAVFRAKLAGGSAGGVIT

A0A5D3BRI2 Uncharacterized protein2.9e-1543.61Show/hide
Query:  FDFIDRPRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVNYV-------YQ
        F+ +  PR NR S++   L + + +        LSTLSVLRDN+ VVEIELLVP+ LP SAESS S+      LY   ++ +  C   N V       ++
Subjt:  FDFIDRPRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVNYV-------YQ

Query:  VKQSQQVFLRGNNVCWLHAVFRAKLAGGSAGGV
        V       +RG +VCWLHAVF+AK AGG  GGV
Subjt:  VKQSQQVFLRGNNVCWLHAVFRAKLAGGSAGGV

A0A5D3CMM1 Reverse transcriptase3.8e-1544.96Show/hide
Query:  PRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQ
        PRGNR S++ + L + + +        LSTLSVLRDN+ VVEI+L VPD L  SAESS S+      LY   ++ +  C   N        V+ V     
Subjt:  PRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQ

Query:  VFLRGNNVCWLHAVFRAKLAGGSAGGVIT
          +RG+NVCWLHAVFRA+ AGG  GGV T
Subjt:  VFLRGNNVCWLHAVFRAKLAGGSAGGVIT

A0A5D3DSY7 Putative Retrotransposon protein2.9e-1546.09Show/hide
Query:  RGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQV
        RGNRSS+++  L   + +        LSTLSVLRDN+ VVEIEL VPD LP SAESS S+      LY   ++ +  C   N        V+ V      
Subjt:  RGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDI-----LYVAGLYSKSLCIVVN-------YVYQVKQSQQV

Query:  FLRGNNVCWLHAVFRAKLAGGSAGGVIT
         +RG++VCWLHAVFRAK  GG  GGV T
Subjt:  FLRGNNVCWLHAVFRAKLAGGSAGGVIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTAACCGAGCAATCTCCTTTTTGGGTTGGTTTTCGGTCTGGTTCGAGTGGTTCAATTGGTTTTGATTTCATTGACAGGCCAAGAGGAAATAGGTCGAGTGTACG
GGCCAAAGTTCTACCCGAGGCTTTATGGTACCGTGTGCACACAGGTCATATTCTGTTGTCGACGTTAAGTGTACTCCGTGACAACAATGTTGTCGTAGAGATCGAGCTCC
TGGTACCTGACATCCTGCCACAGTCTGCTGAGAGCTCCACAAGTGATATTTTGTATGTGGCTGGGTTGTATAGCAAGTCCTTATGTATTGTAGTTAATTATGTTTATCAG
GTAAAGCAGAGTCAGCAGGTCTTTTTAAGAGGTAACAATGTCTGTTGGCTTCATGCAGTCTTCCGGGCTAAGTTAGCAGGTGGTTCGGCAGGGGGTGTGATAACTTCAAT
GTGGCTGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTAACCGAGCAATCTCCTTTTTGGGTTGGTTTTCGGTCTGGTTCGAGTGGTTCAATTGGTTTTGATTTCATTGACAGGCCAAGAGGAAATAGGTCGAGTGTACG
GGCCAAAGTTCTACCCGAGGCTTTATGGTACCGTGTGCACACAGGTCATATTCTGTTGTCGACGTTAAGTGTACTCCGTGACAACAATGTTGTCGTAGAGATCGAGCTCC
TGGTACCTGACATCCTGCCACAGTCTGCTGAGAGCTCCACAAGTGATATTTTGTATGTGGCTGGGTTGTATAGCAAGTCCTTATGTATTGTAGTTAATTATGTTTATCAG
GTAAAGCAGAGTCAGCAGGTCTTTTTAAGAGGTAACAATGTCTGTTGGCTTCATGCAGTCTTCCGGGCTAAGTTAGCAGGTGGTTCGGCAGGGGGTGTGATAACTTCAAT
GTGGCTGAGATGA
Protein sequenceShow/hide protein sequence
MRLTEQSPFWVGFRSGSSGSIGFDFIDRPRGNRSSVRAKVLPEALWYRVHTGHILLSTLSVLRDNNVVVEIELLVPDILPQSAESSTSDILYVAGLYSKSLCIVVNYVYQ
VKQSQQVFLRGNNVCWLHAVFRAKLAGGSAGGVITSMWLR