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Tan0005152 (gene) of Snake gourd v1 genome

Gene IDTan0005152
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H-like domain containing protein
Genome locationLG01:109777171..109778188
RNA-Seq ExpressionTan0005152
SyntenyTan0005152
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON36736.1 Ribonuclease H-like domain containing protein [Parasponia andersonii]9.8e-0437.65Show/hide
Query:  IKCLEAMTIREGMQHLISFPDQMPSPLVIQSDSSEAVRAIISRNEDLSEIRLIVEDIDNLRSKLNSVVFEKCTRSGNRVAHALAR
        ++  EAM IR+G++   +  D    PL+I+SD+S  VR II+ +  L+EI +++ DI N  + + S V      S NR AHA A+
Subjt:  IKCLEAMTIREGMQHLISFPDQMPSPLVIQSDSSEAVRAIISRNEDLSEIRLIVEDIDNLRSKLNSVVFEKCTRSGNRVAHALAR
TrEMBL top hitse value%identityAlignment
A0A2P5AJL1 Ribonuclease H-like domain containing protein4.8e-0437.65Show/hide
Query:  IKCLEAMTIREGMQHLISFPDQMPSPLVIQSDSSEAVRAIISRNEDLSEIRLIVEDIDNLRSKLNSVVFEKCTRSGNRVAHALAR
        ++  EAM IR+G++   +  D    PL+I+SD+S  VR II+ +  L+EI +++ DI N  + + S V      S NR AHA A+
Subjt:  IKCLEAMTIREGMQHLISFPDQMPSPLVIQSDSSEAVRAIISRNEDLSEIRLIVEDIDNLRSKLNSVVFEKCTRSGNRVAHALAR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGATTAAGTGTTTGGAGGCCATGACAATCAGGGAAGGCATGCAACATTTAATTTCCTTTCCTGATCAAATGCCTTCCCCCCTGGTTATTCAATCTGACTCCTCTGA
AGCTGTAAGAGCGATTATCTCCAGAAATGAAGACCTCTCGGAGATCCGACTGATTGTGGAAGATATTGACAACCTTCGTTCGAAGCTTAACTCGGTGGTTTTTGAAAAAT
GCACAAGGTCTGGTAACAGGGTGGCTCATGCCCTCGCCAGAATAGCCATGGAAGCTTCTCCCCCGTCGACTTGCATGGAGGAAGCGAAAGTTTCTAGACCTGAGGAAGGC
GTCTTCTTGTCTTCTGTTTTTCCTTCTTGGTTTGTTAATCTCATTAATGAGGACGCTGGCAGTTGTGTTTTTGAATATGATTTTGAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGATTAAGTGTTTGGAGGCCATGACAATCAGGGAAGGCATGCAACATTTAATTTCCTTTCCTGATCAAATGCCTTCCCCCCTGGTTATTCAATCTGACTCCTCTGA
AGCTGTAAGAGCGATTATCTCCAGAAATGAAGACCTCTCGGAGATCCGACTGATTGTGGAAGATATTGACAACCTTCGTTCGAAGCTTAACTCGGTGGTTTTTGAAAAAT
GCACAAGGTCTGGTAACAGGGTGGCTCATGCCCTCGCCAGAATAGCCATGGAAGCTTCTCCCCCGTCGACTTGCATGGAGGAAGCGAAAGTTTCTAGACCTGAGGAAGGC
GTCTTCTTGTCTTCTGTTTTTCCTTCTTGGTTTGTTAATCTCATTAATGAGGACGCTGGCAGTTGTGTTTTTGAATATGATTTTGAAAAATGA
Protein sequenceShow/hide protein sequence
MPIKCLEAMTIREGMQHLISFPDQMPSPLVIQSDSSEAVRAIISRNEDLSEIRLIVEDIDNLRSKLNSVVFEKCTRSGNRVAHALARIAMEASPPSTCMEEAKVSRPEEG
VFLSSVFPSWFVNLINEDAGSCVFEYDFEK