CuGenDBv2

Gene ID	Tan0005165
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Genome location	LG06:4536122..4540483
RNA-Seq Expression	Tan0005165
Synteny	Tan0005165
Gene Ontology terms	GO:0006366 - transcription by RNA polymerase II (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0001055 - RNA polymerase II activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain IPR036603 - RNA polymerase, RBP11-like subunit IPR037685 - RNA polymerase RBP11

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593293.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-47

84.48

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEG  SRFSRTY
Subjt:  LKYELEGEISRFSRTY

XP_004135939.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus]

4.9e-49

87.07

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHT+GNI R+QLHR DNVLF GYQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEGEISRFSR Y
Subjt:  LKYELEGEISRFSRTY

XP_008461312.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo]

2.4e-48

86.21

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHT+GNI R+QLHR DNVLF GYQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELE EISRFSR Y
Subjt:  LKYELEGEISRFSRTY

XP_022960210.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita moschata]

2.0e-47

84.48

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEG  SRFSRTY
Subjt:  LKYELEGEISRFSRTY

XP_038899336.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]

1.8e-48

86.21

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHT+G+I R+QLHR DNVLF GYQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEGEISRFSR Y
Subjt:  LKYELEGEISRFSRTY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like

1.2e-48

86.21

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHT+GNI R+QLHR DNVLF GYQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELE EISRFSR Y
Subjt:  LKYELEGEISRFSRTY

A0A6J1DA06 DNA-directed RNA polymerases II, IV and V subunit 11-like

1.3e-47

83.62

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHTVGNI R+QLHR DNVLF  YQL  PLKY IL+RIHT SQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LK+ELE E+SRFSR Y
Subjt:  LKYELEGEISRFSRTY

A0A6J1H6T9 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2

9.3e-46

83.62

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  YQL  PLKY ILVR  T SQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEG  SRFSRTY
Subjt:  LKYELEGEISRFSRTY

A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

9.9e-48

84.48

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEG  SRFSRTY
Subjt:  LKYELEGEISRFSRTY

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

2.9e-47

83.62

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEG  SRFSR+Y
Subjt:  LKYELEGEISRFSRTY

SwissProt top hits

e value

%identity

Alignment

O08740 DNA-directed RNA polymerase II subunit RPB11

1.7e-20

43.12

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +D K+ NA  F + +EDHT+GNI + QL +   VLF GY++  PL++ I++R+ TT   SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEI
        L+    G I
Subjt:  LKYELEGEI

P52435 DNA-directed RNA polymerase II subunit RPB11-a

1.1e-19

44.12

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +D K+ NA  F + +EDHT+GNI + QL +   VLF GY++  PL++ I++R+ TT   SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LK
        L+
Subjt:  LK

Q32P79 DNA-directed RNA polymerase II subunit RPB11

1.1e-19

44.12

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +D K+ NA  F + +EDHT+GNI + QL +   VLF GY++  PL++ I++R+ TT   SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LK
        L+
Subjt:  LK

Q38859 DNA-directed RNA polymerases II, IV and V subunit 11

2.6e-45

74.14

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MN P+RYERFVVPEGTKKVSY+RD KI+NA +F +EREDHT+GNI R+QLHR +NVLF GYQL  PLKY I+VRIHTTSQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LK + E E+++FS  +
Subjt:  LKYELEGEISRFSRTY

Q7PVQ9 DNA-directed RNA polymerase II subunit RPB11

3.8e-20

48.04

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK+  E DMK+ NA  F + +EDHT+GN+ R QL +  NVLF GY+L  PL++  ++RI TTS+ SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LK
         +
Subjt:  LK

Arabidopsis top hits

e value

%identity

Alignment

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like

1.8e-46

74.14

Show/hide

Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL
        MN P+RYERFVVPEGTKKVSY+RD KI+NA +F +EREDHT+GNI R+QLHR +NVLF GYQL  PLKY I+VRIHTTSQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LK + E E+++FS  +
Subjt:  LKYELEGEISRFSRTY

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like

1.0e-41

58.9

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Query:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVR--------------------------
        MN P+RYERFVVPEGTKKVSY+RD KI+NA +F +EREDHT+GNI R+QLHR +NVLF GYQL  PLKY I+VR                          
Subjt:  MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVR--------------------------

Query:  ----IHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY
            IHTTSQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Subjt:  ----IHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY

Sequences

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CDS sequence

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ATGAACGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCTGAGGGCACCAAGAAGGTTTCATACGAGAGAGACATGAAGATCATGAACGCGACGACCTTTATATTGGAAAG
AGAGGATCATACCGTTGGAAACATCTTCCGCATACAACTTCACAGATATGATAATGTGTTGTTTGTTGGCTACCAGCTTACTCGCCCTCTTAAGTACATAATACTTGTCC
GGATACACACGACTAGCCAGTCTTCACCGATGCAGGCGTATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATACGAACTCGAGGGTGAGATTTCT
AGGTTCTCGAGGACCTACTAG

mRNA sequence

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Protein sequence

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MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEIS
RFSRTY

Tan0005165 (gene) of Snake gourd v1 genome