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Tan0005184 (gene) of Snake gourd v1 genome

Gene IDTan0005184
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLysM domain-containing protein
Genome locationLG04:53268115..53269516
RNA-Seq ExpressionTan0005184
SyntenyTan0005184
Gene Ontology termsGO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]2.5e-1960.82Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVT--LQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL
        M KA  SIAI   FL A SLLIF ISV+ R      V  E +  LQCNK +GVKSGDTCF +A  FKL+T+ F+FINPNLNCS LF+ QW+CVN FL
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVT--LQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]3.6e-2159.79Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRA-PSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFLI
        M KA+ S +    FL A SLLIF+ISV+TR+ P  G V   + LQCNKV+GVK+GDTCFDL   FK++T  F+FINPNLNC+DLFIGQW+C++  LI
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRA-PSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFLI

KZV16033.1 hypothetical protein F511_26162 [Dorcoceras hygrometricum]8.5e-1544.68Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGF
        M KA ++ +I   F   LSL++ T   ++R          VTL CN V  V  GDTCFD+A  F L+T  F+ INPN+NC  LF+GQW+C++GF
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGF

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]3.9e-2062.89Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVE--VTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL
        M KA   IAI   FL A  LLIF+ISV+     G  V  E  + LQCNK +GVKSGDTCF LA+ FKLST+ FNFINPNLNCS LF+GQW+CVN FL
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVE--VTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]5.7e-1961.22Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVE---VTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL
        M KA  SIAI   FL A SLLIF ISV+      G V VE   + LQCNK +GVKSGDTCF +A  FKL+T+ F+FINPNLNCS LF+ QW+CVN FL
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVE---VTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein1.7e-2159.79Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRA-PSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFLI
        M KA+ S +    FL A SLLIF+ISV+TR+ P  G V   + LQCNKV+GVK+GDTCFDL   FK++T  F+FINPNLNC+DLFIGQW+C++  LI
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRA-PSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFLI

A0A0A0KLD2 LysM domain-containing protein1.2e-1960.82Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVT--LQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL
        M KA  SIAI   FL A SLLIF ISV+ R      V  E +  LQCNK +GVKSGDTCF +A  FKL+T+ F+FINPNLNCS LF+ QW+CVN FL
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVT--LQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like1.9e-2062.89Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVE--VTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL
        M KA   IAI   FL A  LLIF+ISV+     G  V  E  + LQCNK +GVKSGDTCF LA+ FKLST+ FNFINPNLNCS LF+GQW+CVN FL
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVE--VTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFL

A0A2Z7A345 LysM domain-containing protein5.4e-1544.68Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGF
        M KA ++ +I   F   LSL++ T   ++R          VTL CN V  V  GDTCFD+A  F L+T  F+ INPN+NC  LF+GQW+C++GF
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGF

A0A2Z7A4L5 LysM domain-containing protein4.1e-1544.68Show/hide
Query:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGF
        M KA ++ +I   F   LSL++ T   ++R          VTL CN V  V  GDTCFD+A  F L+T  F+ INPN+NC  LF+GQW+C++GF
Subjt:  MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAGGCTATTAGTTCAATTGCCATCAATTTTACCTTCTTATTCGCTCTCTCTCTTCTCATCTTTACAATTTCTGTCCAAACTCGAGCTCCTTCTGGTGGATTTGT
TGGGGTAGAGGTAACTTTGCAATGCAACAAAGTGCATGGAGTGAAGAGTGGGGACACTTGCTTTGATCTTGCAAATATATTCAAGTTGAGCACTGAACGCTTCAATTTTA
TTAATCCAAATCTCAACTGCTCAGATCTCTTTATTGGTCAATGGGTTTGCGTCAATGGCTTTCTCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAAGGCTATTAGTTCAATTGCCATCAATTTTACCTTCTTATTCGCTCTCTCTCTTCTCATCTTTACAATTTCTGTCCAAACTCGAGCTCCTTCTGGTGGATTTGT
TGGGGTAGAGGTAACTTTGCAATGCAACAAAGTGCATGGAGTGAAGAGTGGGGACACTTGCTTTGATCTTGCAAATATATTCAAGTTGAGCACTGAACGCTTCAATTTTA
TTAATCCAAATCTCAACTGCTCAGATCTCTTTATTGGTCAATGGGTTTGCGTCAATGGCTTTCTCATCTAA
Protein sequenceShow/hide protein sequence
MVKAISSIAINFTFLFALSLLIFTISVQTRAPSGGFVGVEVTLQCNKVHGVKSGDTCFDLANIFKLSTERFNFINPNLNCSDLFIGQWVCVNGFLI