CuGenDBv2

Gene ID	Tan0005230
Organism	Trichosanthes anguina (Snake gourd v1)
Description	TATA-box-binding protein
Genome location	LG09:62263219..62264366
RNA-Seq Expression	Tan0005230
Synteny	Tan0005230
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0006413 - translational initiation (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domains	IPR000814 - TATA-box binding protein IPR012295 - TBP domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055733.1 TATA-box-binding protein isoform X2 [Cucumis melo var. makuwa]

1.4e-23

100

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG

KAG6588117.1 TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia]

5.8e-22

100

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

KAG7022001.1 TATA-box-binding protein [Cucurbita argyrosperma subsp. argyrosperma]

4.8e-24

98.33

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGFL
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG L
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGFL

TYK09982.1 TATA-box-binding protein [Cucumis melo var. makuwa]

5.8e-22

100

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

XP_004144066.1 TATA-box-binding protein [Cucumis sativus]

5.8e-22

100

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWT4 Uncharacterized protein

2.8e-22

100

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

A0A5A7UIK5 TATA-box-binding protein isoform X2

6.7e-24

100

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG

A0A5D3CF95 TATA-box-binding protein

2.8e-22

100

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

A0A6J1H9G6 TATA-box-binding protein

2.8e-22

100

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

A0A6J1JDU6 TATA-box-binding protein

2.8e-22

100

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

SwissProt top hits

e value

%identity

Alignment

P26357 TATA-box-binding protein

8.5e-24

96.36

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQGLEG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

P28147 TATA-box-binding protein 1

7.2e-23

92.73

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        M DQGLEG+ PVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

P28148 TATA-box-binding protein 2

3.2e-23

94.55

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQG EG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

P50159 TATA-box-binding protein 2

9.4e-23

92.73

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MA+ GLEG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

Q42808 TATA-box-binding protein

1.4e-23

94.55

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQGLEG+QPVDL+KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

Arabidopsis top hits

e value

%identity

Alignment

AT1G55520.1 TATA binding protein 2

2.3e-24

94.55

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQG EG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

AT1G55520.2 TATA binding protein 2

2.3e-24

94.55

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        MADQG EG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

AT3G13440.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

3.1e-05

79.17

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Query:  MADQGLEGAQPVDLKKHPSGIVPT
        MADQGLE + P+DL KHPSGIVPT
Subjt:  MADQGLEGAQPVDLKKHPSGIVPT

AT3G13445.1 TATA binding protein 1

5.1e-24

92.73

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        M DQGLEG+ PVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

AT3G13445.2 TATA binding protein 1

5.1e-24

92.73

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Query:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
        M DQGLEG+ PVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Subjt:  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK

Sequences

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CDS sequence

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ATGGCAGATCAAGGCTTGGAAGGAGCCCAACCTGTCGATCTTAAAAAGCACCCTTCTGGGATTGTACCTACCCTTCAGAACATTGTGTCAACAGTGAATCTGGACTGCAA
GTTGGACCTTAAGGCCATTGCTCTGCAAGCTCGCAATGCTGAATACAATCCCAAGGCAAGTGGTTTTTTATGA

mRNA sequence

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TCTAGGGTTTCCCATTTGCGAGAGGTCTGGCTTTTTTCTGTTCTTAATTTCGTTTGGTTGGTCTTGCGATCAACGGATCGTGCGTGTGTGACTACCGGATGGGTTTTGAT
TTAGTTTTTTTTTTTTTTTTTTTTGTTAGGGTGGTGTCTTTCTTAGATTTGCTTGTGTTGGGTCGTTGTAGATGCCTCGAGAGGATGGGTTTTTGTATACCCCCTCCCTT
CACTAATGATTGATCTCTTAGTGGAGTGGTTTTGTATGATCCATGTATTTCGTTTGACCTTTTTTTGTTAATTTCATTAAATTTTTATTCGAGAAAGTGCGTCCGTGATT
TCCGTACACGATTTATGGATTACTATTTTTAGTTCATCAATGGACATGGAGTCTTGGTCTGTTTATAATTCGAGGATATTTTGTCCTGTTTTTGGGCTTGGGGCGTTGAT
AAAACGCGAAGAGAGGTGGTGTTATTACTTTTTTTGAATAATTATTTTGGAGGAAGAATTTAAAGAGTAGAGTTCCGTCCTTGCAGAGATTTCTTATAAGGAATGGCAGA
TCAAGGCTTGGAAGGAGCCCAACCTGTCGATCTTAAAAAGCACCCTTCTGGGATTGTACCTACCCTTCAGAACATTGTGTCAACAGTGAATCTGGACTGCAAGTTGGACC
TTAAGGCCATTGCTCTGCAAGCTCGCAATGCTGAATACAATCCCAAGGCAAGTGGTTTTTTATGA

Protein sequence

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MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGFL

Tan0005230 (gene) of Snake gourd v1 genome