; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0005256 (gene) of Snake gourd v1 genome

Gene IDTan0005256
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSarcosine dehydrogenase-2C mitochondrial
Genome locationLG01:584771..585516
RNA-Seq ExpressionTan0005256
SyntenyTan0005256
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576620.1 hypothetical protein SDJN03_24194, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4259.15Show/hide
Query:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS--SFLKDDHSDSELSLVAEKGQVACRD
        K   KR+RLNSK         +  ++EE++ PLRP  C+KN          +DLKRFD  E+CYLLDFDPFHS    L    SDS++SLVAEKGQVACRD
Subjt:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS--SFLKDDHSDSELSLVAEKGQVACRD

Query:  YPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNN
        YPHARYLCL FPF  TPH+ YC MCYCYVCDAIAPC+ WT HCHA   D F K+ER+SN N N+
Subjt:  YPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNN

XP_022140919.1 uncharacterized protein LOC111011466 [Momordica charantia]5.2e-3952.6Show/hide
Query:  GRKKRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS---SFLKDDHSDSELSLVAEKGQV
        G K +  +R+ +N +   G           E  +PLR   C+KN          VDLKRFDEREDCY+LDFDPFHS   S  KD  +DSELS+V EKGQV
Subjt:  GRKKRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS---SFLKDDHSDSELSLVAEKGQV

Query:  ACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQER---QSNINLNNTI
        ACRDYPHARYLC+KFPFD TPH+  C MC+CYVCD+ APC+ W+ HC ASHT+  W+  R    +NIN+ +T+
Subjt:  ACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQER---QSNINLNNTI

XP_022922610.1 uncharacterized protein LOC111430566 [Cucurbita moschata]7.7e-4358.68Show/hide
Query:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS----SFLKDDHSDSELSLVAEKGQVAC
        K   KR+RLNSK         +  ++EE++ PLRP  C+KN          +DLKRFD  E+CYLLDFDPFHS        D  SDS++SLVAEKGQVAC
Subjt:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS----SFLKDDHSDSELSLVAEKGQVAC

Query:  RDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT
        RDYPHARYLCLKFPF  TPH+ YC MCYCYVCDAIAPC+ WT HCHA   D F K+ER+SN + N+T
Subjt:  RDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT

XP_022984372.1 uncharacterized protein LOC111482692 [Cucurbita maxima]2.2e-4258.18Show/hide
Query:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS--SFLKDDHSDSELSLVAEKGQVACRD
        K   K++RLNSK            ++EE+  PLRP  C+KN          +DLKRFD  + CYLLDFDPFHS    L    SDS++SLVAEKGQVACRD
Subjt:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS--SFLKDDHSDSELSLVAEKGQVACRD

Query:  YPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT
        YPHARYLCLK PF  TPH+ YC MCYCYVCDAIAPC+ WT HCHA   D  WK+ER+SN N N+T
Subjt:  YPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT

XP_023552151.1 uncharacterized protein LOC111809913 [Cucurbita pepo subsp. pepo]1.4e-4459.28Show/hide
Query:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS----SFLKDDHSDSELSLVAEKGQVAC
        K   KR+RLNSK         +  ++EE++ PLRP  C+KN          +DLKRFD  E+CYLLDF+PFHS        D  SDS++SLVAEKGQVAC
Subjt:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS----SFLKDDHSDSELSLVAEKGQVAC

Query:  RDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT
        RDYPHARYLCLKFPF  TPH+ YC MCYCYVCDAIAPC+ WT HCHA   D FWK+ER+SN N N+T
Subjt:  RDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT

TrEMBL top hitse value%identityAlignment
A0A1U8AXX1 uncharacterized protein LOC1046052286.8e-3753.52Show/hide
Query:  EEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHSSFL---------KDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEK
        EEE+P+R  FCLK          +V L+ FDE+EDC++LDFDPF +  L         K D    E+S++AE+GQVACRDYPH+R+LC+KFPFDKTPHEK
Subjt:  EEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHSSFL---------KDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEK

Query:  YCHMCYCYVCDAIAPCNQW-----TPHCHASHTDLFWKQERQ
        YC  CYCYVCD IAPC  W       HCHA+  D  WK  R+
Subjt:  YCHMCYCYVCDAIAPCNQW-----TPHCHASHTDLFWKQERQ

A0A6J1AYQ8 uncharacterized protein LOC1104224976.2e-3852.05Show/hide
Query:  EEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHSSFL-----KDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKT
        + ++E+EEE+ +PLRP FCLK          ++D+KR +E EDC++LDF+PF S  +      +D  D +LS+V EKGQ+ACRDYPH+R+LCL+FPFD T
Subjt:  EEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHSSFL-----KDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKT

Query:  PHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINL
        PHE++CH+CYCYVCD+ APC  W  HCHAS     WK +R+S +N+
Subjt:  PHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINL

A0A6J1CH43 uncharacterized protein LOC1110114662.5e-3952.6Show/hide
Query:  GRKKRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS---SFLKDDHSDSELSLVAEKGQV
        G K +  +R+ +N +   G           E  +PLR   C+KN          VDLKRFDEREDCY+LDFDPFHS   S  KD  +DSELS+V EKGQV
Subjt:  GRKKRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS---SFLKDDHSDSELSLVAEKGQV

Query:  ACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQER---QSNINLNNTI
        ACRDYPHARYLC+KFPFD TPH+  C MC+CYVCD+ APC+ W+ HC ASHT+  W+  R    +NIN+ +T+
Subjt:  ACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQER---QSNINLNNTI

A0A6J1E9A2 uncharacterized protein LOC1114305663.7e-4358.68Show/hide
Query:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS----SFLKDDHSDSELSLVAEKGQVAC
        K   KR+RLNSK         +  ++EE++ PLRP  C+KN          +DLKRFD  E+CYLLDFDPFHS        D  SDS++SLVAEKGQVAC
Subjt:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS----SFLKDDHSDSELSLVAEKGQVAC

Query:  RDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT
        RDYPHARYLCLKFPF  TPH+ YC MCYCYVCDAIAPC+ WT HCHA   D F K+ER+SN + N+T
Subjt:  RDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT

A0A6J1J202 uncharacterized protein LOC1114826921.1e-4258.18Show/hide
Query:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS--SFLKDDHSDSELSLVAEKGQVACRD
        K   K++RLNSK            ++EE+  PLRP  C+KN          +DLKRFD  + CYLLDFDPFHS    L    SDS++SLVAEKGQVACRD
Subjt:  KRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHS--SFLKDDHSDSELSLVAEKGQVACRD

Query:  YPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT
        YPHARYLCLK PF  TPH+ YC MCYCYVCDAIAPC+ WT HCHA   D  WK+ER+SN N N+T
Subjt:  YPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G20310.1 RPM1 interacting protein 135.0e-2440.5Show/hide
Query:  KNSNSNNISVDLKRFDEREDCYLLDFDP--FHSSFLKDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQW---
        +  NS+N     +  ++ +DC +LD DP     +   DD  D ++ +V +KG++ACRD+PH R+ C K+ F+ T HEKYC MC+CYVCD  APC  W   
Subjt:  KNSNSNNISVDLKRFDEREDCYLLDFDP--FHSSFLKDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQW---

Query:  ---TPHCHASHTDLFWKQERQ
             HCHA+  +  WK +R+
Subjt:  ---TPHCHASHTDLFWKQERQ

AT4G27660.1 unknown protein3.5e-3345.83Show/hide
Query:  RKKRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDP---FHSSFLKD---DHSDSELSLVAEKG
        +K +  +RKRL+           +EEEEEEE TPLR  FCLK ++         D+K F+E+EDC++LDFDP   F +  L D      D ++++V EKG
Subjt:  RKKRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDP---FHSSFLKD---DHSDSELSLVAEKG

Query:  QVACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQW-----TPHCHASHTDLFWKQERQ
        QVACRD+PH R+LCLKFPF+ + H  +C+ CYCYVCD +APC  W     TPHC A      WK  R+
Subjt:  QVACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQW-----TPHCHASHTDLFWKQERQ

AT4G28690.1 BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 13 (TAIR:AT2G20310.1)1.5e-2341.9Show/hide
Query:  DEREDCYLLDFDPFHSSFLKDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQW-------TPHCHASHTDLFW
        D+ +DC +LDFDP     + +      + +V +KG+VACRD+PH R+ C K+PF  T H+ +C MC+CYVCD  APC  W       T HCHA+  +  W
Subjt:  DEREDCYLLDFDPFHSSFLKDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQW-------TPHCHASHTDLFW

Query:  KQERQ
          +R+
Subjt:  KQERQ

AT5G54148.1 unknown protein2.9e-2443.41Show/hide
Query:  EEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHSSFLKDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEKYCHMC
        E++EE++TPL   FCLK ++         D+KRF+E EDC++LDFDPF S  +K      +L+   +  +    DYPH R+ CL FPF  TP+  +C +C
Subjt:  EEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHSSFLKDDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEKYCHMC

Query:  YCYVCDAIAPCNQW---TPHCHASHTDLF
        YCYVCD  APC +W   T HC+A  + L+
Subjt:  YCYVCDAIAPCNQW---TPHCHASHTDLF

AT5G54150.1 unknown protein9.8e-2847.93Show/hide
Query:  EEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHSSFLK--DDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEKYCHMCY
        EEE +PLR   C+K ++         D+KRF++ EDC++LDF+PF S  +K      D +L ++ E GQVACRDYPH R+LCL FPF  T +  +C +CY
Subjt:  EEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHSSFLK--DDHSDSELSLVAEKGQVACRDYPHARYLCLKFPFDKTPHEKYCHMCY

Query:  CYVCDAIAPCNQW-TPHCHAS
        C+VCD  APC  W + HC+AS
Subjt:  CYVCDAIAPCNQW-TPHCHAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTGGGAAGAAAGAAGAGAATGATGAAGCGGAAACGTTTGAATTCAAAAAGGTGGGAGGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAC
GCCTCTCCGACCTTTTTTCTGCCTGAAAAATAAAAAGAATAGTAATAGTAATAATATAAGTGTGGATTTGAAGCGTTTCGACGAAAGGGAGGACTGTTACCTTTTGGACT
TTGACCCATTTCATTCCTCGTTTCTTAAGGACGATCACTCTGACTCTGAACTCTCTCTTGTGGCTGAAAAGGGTCAGGTTGCCTGTAGAGACTATCCGCACGCCAGGTAT
TTGTGTCTCAAATTTCCCTTCGACAAAACTCCTCACGAGAAATACTGTCATATGTGCTACTGTTACGTGTGTGACGCGATAGCTCCATGCAACCAGTGGACGCCACACTG
CCATGCTTCACACACTGATCTATTTTGGAAACAGGAAAGGCAATCCAACATCAATCTTAACAACACCATTCTGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTGGGAAGAAAGAAGAGAATGATGAAGCGGAAACGTTTGAATTCAAAAAGGTGGGAGGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAC
GCCTCTCCGACCTTTTTTCTGCCTGAAAAATAAAAAGAATAGTAATAGTAATAATATAAGTGTGGATTTGAAGCGTTTCGACGAAAGGGAGGACTGTTACCTTTTGGACT
TTGACCCATTTCATTCCTCGTTTCTTAAGGACGATCACTCTGACTCTGAACTCTCTCTTGTGGCTGAAAAGGGTCAGGTTGCCTGTAGAGACTATCCGCACGCCAGGTAT
TTGTGTCTCAAATTTCCCTTCGACAAAACTCCTCACGAGAAATACTGTCATATGTGCTACTGTTACGTGTGTGACGCGATAGCTCCATGCAACCAGTGGACGCCACACTG
CCATGCTTCACACACTGATCTATTTTGGAAACAGGAAAGGCAATCCAACATCAATCTTAACAACACCATTCTGCATTAG
Protein sequenceShow/hide protein sequence
MRLGRKKRMMKRKRLNSKRWEGEGEEEEEEEEEEEETPLRPFFCLKNKKNSNSNNISVDLKRFDEREDCYLLDFDPFHSSFLKDDHSDSELSLVAEKGQVACRDYPHARY
LCLKFPFDKTPHEKYCHMCYCYVCDAIAPCNQWTPHCHASHTDLFWKQERQSNINLNNTILH