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Tan0005275 (gene) of Snake gourd v1 genome

Gene IDTan0005275
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG08:61656816..61667199
RNA-Seq ExpressionTan0005275
SyntenyTan0005275
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.6e-0943.69Show/hide
Query:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRKVDDVCWLHAIFRAKLTG
        MTEIL+ RLY TVCTQV+IELP+P+ LP         F+        S+ +E        V   L  +  +S   GSTGI+R  DDVCWLHA+FR K   
Subjt:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRKVDDVCWLHAIFRAKLTG

Query:  SSG
          G
Subjt:  SSG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1038.89Show/hide
Query:  MTEILNPRLYSTVCTQ-----------------VEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRK
        MTEIL+PRLY TVCTQ                 VEIELPVP+ LP                +  S        +EL V  +   + WL+GI        +
Subjt:  MTEILNPRLYSTVCTQ-----------------VEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRK

Query:  VDDVCWLHAIFRAKLTGSSGGGLFQP
         DDVCWLHA+FRAK  G  GGG+  P
Subjt:  VDDVCWLHAIFRAKLTGSSGGGLFQP

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.1e-0840.31Show/hide
Query:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILP-----------YI--DWLSGI-------TGSTGI
        MTEIL+ RL+ TVCTQV   L    +L               R N      + +VEIELPVP  LP           Y     +SG+         STGI
Subjt:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILP-----------YI--DWLSGI-------TGSTGI

Query:  LRKVDDVCWLHAIFRAKLTGSSGGGLFQP
        +R  DDVCWLHA+FRAK TG   GG+  P
Subjt:  LRKVDDVCWLHAIFRAKLTGSSGGGLFQP

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]1.6e-0944.44Show/hide
Query:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILP--YIDWLSGITGSTGILRKVDDVCWLHAIFRAKL
        MTEIL+  LY TVCTQV   L    +L               R N      + +VEIELPVP  LP   +   + I GS GI+R+ D+VCWL A+FRAK 
Subjt:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILP--YIDWLSGITGSTGILRKVDDVCWLHAIFRAKL

Query:  TGSSGGGL
        TG  GGG+
Subjt:  TGSSGGGL

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1038.89Show/hide
Query:  MTEILNPRLYSTVCTQ-----------------VEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRK
        MTEIL+PRLY TVCTQ                 VEIELPVP+ LP                +  S        +EL V  +   + WL+GI        +
Subjt:  MTEILNPRLYSTVCTQ-----------------VEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRK

Query:  VDDVCWLHAIFRAKLTGSSGGGLFQP
         DDVCWLHA+FRAK  G  GGG+  P
Subjt:  VDDVCWLHAIFRAKLTGSSGGGLFQP

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein8.0e-1043.69Show/hide
Query:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRKVDDVCWLHAIFRAKLTG
        MTEIL+ RLY TVCTQV+IELP+P+ LP         F+        S+ +E        V   L  +  +S   GSTGI+R  DDVCWLHA+FR K   
Subjt:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRKVDDVCWLHAIFRAKLTG

Query:  SSG
          G
Subjt:  SSG

A0A5A7VMG9 Reverse transcriptase9.4e-1138.89Show/hide
Query:  MTEILNPRLYSTVCTQ-----------------VEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRK
        MTEIL+PRLY TVCTQ                 VEIELPVP+ LP                +  S        +EL V  +   + WL+GI        +
Subjt:  MTEILNPRLYSTVCTQ-----------------VEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRK

Query:  VDDVCWLHAIFRAKLTGSSGGGLFQP
         DDVCWLHA+FRAK  G  GGG+  P
Subjt:  VDDVCWLHAIFRAKLTGSSGGGLFQP

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.5e-0840.31Show/hide
Query:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILP-----------YI--DWLSGI-------TGSTGI
        MTEIL+ RL+ TVCTQV   L    +L               R N      + +VEIELPVP  LP           Y     +SG+         STGI
Subjt:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILP-----------YI--DWLSGI-------TGSTGI

Query:  LRKVDDVCWLHAIFRAKLTGSSGGGLFQP
        +R  DDVCWLHA+FRAK TG   GG+  P
Subjt:  LRKVDDVCWLHAIFRAKLTGSSGGGLFQP

A0A5D3C4P7 Retrotrans_gag domain-containing protein8.0e-1044.44Show/hide
Query:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILP--YIDWLSGITGSTGILRKVDDVCWLHAIFRAKL
        MTEIL+  LY TVCTQV   L    +L               R N      + +VEIELPVP  LP   +   + I GS GI+R+ D+VCWL A+FRAK 
Subjt:  MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILP--YIDWLSGITGSTGILRKVDDVCWLHAIFRAKL

Query:  TGSSGGGL
        TG  GGG+
Subjt:  TGSSGGGL

A0A5D3DX39 Reverse transcriptase9.4e-1138.89Show/hide
Query:  MTEILNPRLYSTVCTQ-----------------VEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRK
        MTEIL+PRLY TVCTQ                 VEIELPVP+ LP                +  S        +EL V  +   + WL+GI        +
Subjt:  MTEILNPRLYSTVCTQ-----------------VEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRK

Query:  VDDVCWLHAIFRAKLTGSSGGGLFQP
         DDVCWLHA+FRAK  G  GGG+  P
Subjt:  VDDVCWLHAIFRAKLTGSSGGGLFQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAACCCGAGGTTGTATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGAAATCCTGCCATACTTTAGAGGGTTCAAAAATGAAGA
GTTTGATATAAAGCCAAGAGGAAATAGGTCTAGTATACGGATCGAGGATCTAGTAGAGATCGAGCTCCCGGTGCCTAAAATCCTGCCATATATAGATTGGTTATCAGGTA
TAACAGGGTCAACAGGAATCCTTAGAAAGGTAGACGATGTCTGTTGGCTTCACGCCATATTTCGGGCTAAGTTAACGGGTAGTTCGGGAGGGGGCTTGTTTCAGCCCATA
TATAGACCTTTGAAGCCGACAAACCTTTTTCTCTTAGTCTTGGGTAATGAACCCCTTTGGTTGGTCCATGTAGATGGTCTAGTCAAGATTGCAATTCAGAAAGGTCGTCT
TGACATCAATTTGTCATACCTTATAGTCATAATATGTGGCAATGGCCAGAAGGATCCTGATAGACTTTACCATGGCAACAGGAGAAAAGGTTTCCTCATAGTCAACCCCT
TCTTGCTAGGTGAAACCCTTTGCAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAACCCGAGGTTGTATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGAAATCCTGCCATACTTTAGAGGGTTCAAAAATGAAGA
GTTTGATATAAAGCCAAGAGGAAATAGGTCTAGTATACGGATCGAGGATCTAGTAGAGATCGAGCTCCCGGTGCCTAAAATCCTGCCATATATAGATTGGTTATCAGGTA
TAACAGGGTCAACAGGAATCCTTAGAAAGGTAGACGATGTCTGTTGGCTTCACGCCATATTTCGGGCTAAGTTAACGGGTAGTTCGGGAGGGGGCTTGTTTCAGCCCATA
TATAGACCTTTGAAGCCGACAAACCTTTTTCTCTTAGTCTTGGGTAATGAACCCCTTTGGTTGGTCCATGTAGATGGTCTAGTCAAGATTGCAATTCAGAAAGGTCGTCT
TGACATCAATTTGTCATACCTTATAGTCATAATATGTGGCAATGGCCAGAAGGATCCTGATAGACTTTACCATGGCAACAGGAGAAAAGGTTTCCTCATAGTCAACCCCT
TCTTGCTAGGTGAAACCCTTTGCAACTAG
Protein sequenceShow/hide protein sequence
MTEILNPRLYSTVCTQVEIELPVPEILPYFRGFKNEEFDIKPRGNRSSIRIEDLVEIELPVPKILPYIDWLSGITGSTGILRKVDDVCWLHAIFRAKLTGSSGGGLFQPI
YRPLKPTNLFLLVLGNEPLWLVHVDGLVKIAIQKGRLDINLSYLIVIICGNGQKDPDRLYHGNRRKGFLIVNPFLLGETLCN