; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0005297 (gene) of Snake gourd v1 genome

Gene IDTan0005297
OrganismTrichosanthes anguina (Snake gourd v1)
Description40S ribosomal protein S9
Genome locationLG06:69529295..69530937
RNA-Seq ExpressionTan0005297
SyntenyTan0005297
Gene Ontology termsGO:0015935 - small ribosomal subunit (cellular component)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002942 - RNA-binding S4 domain
IPR018079 - Ribosomal protein S4, conserved site
IPR022801 - Ribosomal protein S4/S9
IPR036986 - RNA-binding S4 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8037255.1 hypothetical protein BT93_B0229 [Corymbia citriodora subsp. variegata]4.4e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

PON57336.1 Ribosomal protein [Parasponia andersonii]4.4e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

XP_022141887.1 40S ribosomal protein S9-2-like [Momordica charantia]4.4e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

XP_022142910.1 40S ribosomal protein S9-2 [Momordica charantia]4.4e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

XP_024018555.1 40S ribosomal protein S9-2 [Morus notabilis]4.4e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

TrEMBL top hitse value%identityAlignment
A0A2P5C8D5 Ribosomal protein2.1e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

A0A2P5DF58 Ribosomal protein2.1e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

A0A6J1CL41 40S ribosomal protein S9-2-like2.1e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

A0A6J1DCX8 40S ribosomal protein S9-22.1e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

W9QQ56 40S ribosomal protein S9-22.1e-3464.29Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQYALSRIRNNARMLLTLDEK+                                 T+  FLERRLQTLVFKSGMAKSIHHARVLIRQRHI   RQVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRVDSQKHIDFSLTSPFGGGR           + +KAA GDGDEEDED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

SwissProt top hitse value%identityAlignment
A6QLG5 40S ribosomal protein S99.3e-2751.32Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS-----------------------------------TIFLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV
        +WRV++ L++IR  AR LLTLDEK                                      FLERRLQT VFK G+AKSIHHARVLIRQRHIR   QVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS-----------------------------------TIFLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR----------SCQKAAGDGDEEDED
        NIPSF+VR+DSQKHIDFSL SP+GGGR            Q  AG GD+E+ED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR----------SCQKAAGDGDEEDED

P46781 40S ribosomal protein S99.3e-2751.32Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS-----------------------------------TIFLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV
        +WRV++ L++IR  AR LLTLDEK                                      FLERRLQT VFK G+AKSIHHARVLIRQRHIR   QVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS-----------------------------------TIFLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR----------SCQKAAGDGDEEDED
        NIPSF+VR+DSQKHIDFSL SP+GGGR            Q  AG GD+E+ED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR----------SCQKAAGDGDEEDED

Q6ZWN5 40S ribosomal protein S99.3e-2751.32Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS-----------------------------------TIFLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV
        +WRV++ L++IR  AR LLTLDEK                                      FLERRLQT VFK G+AKSIHHARVLIRQRHIR   QVV
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS-----------------------------------TIFLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR----------SCQKAAGDGDEEDED
        NIPSF+VR+DSQKHIDFSL SP+GGGR            Q  AG GD+E+ED
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR----------SCQKAAGDGDEEDED

Q9FLF0 40S ribosomal protein S9-22.5e-3257.79Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQY LSRIRN AR LLTLDEK+                                 T+  FLERRLQT+VFKSGMAKSIHHARVLIRQRHI   RQ+V
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRV+SQKH+DFSLTSPFGGGR             +KA+ GDGDE+DE+
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED

Q9LXG1 40S ribosomal protein S9-12.1e-3156.21Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV
        LWRVQY+LSRIRN AR LLTLDEKS                                 T+  FLERRLQT+VFKSGMAKSIHH+RVLIRQRHIR   Q+V
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAAGDGDEEDED
        NIPSFMVR+DSQKHIDF+LTSPFGGGR           + +KA+G GD + +D
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAAGDGDEEDED

Arabidopsis top hitse value%identityAlignment
AT5G15200.1 Ribosomal protein S41.5e-3256.21Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV
        LWRVQY+LSRIRN AR LLTLDEKS                                 T+  FLERRLQT+VFKSGMAKSIHH+RVLIRQRHIR   Q+V
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHIR---QVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAAGDGDEEDED
        NIPSFMVR+DSQKHIDF+LTSPFGGGR           + +KA+G GD + +D
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAAGDGDEEDED

AT5G15200.2 Ribosomal protein S41.2e-1654.08Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHIRQVVN
        LWRVQY+LSRIRN AR LLTLDEKS                                 T+  FLERRLQT+VFKSGMAKSIHH+RVLIRQRHIR  ++
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHIRQVVN

AT5G39850.1 Ribosomal protein S41.8e-3357.79Show/hide
Query:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV
        LWRVQY LSRIRN AR LLTLDEK+                                 T+  FLERRLQT+VFKSGMAKSIHHARVLIRQRHI   RQ+V
Subjt:  LWRVQYALSRIRNNARMLLTLDEKS---------------------------------TI--FLERRLQTLVFKSGMAKSIHHARVLIRQRHI---RQVV

Query:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED
        NIPSFMVRV+SQKH+DFSLTSPFGGGR             +KA+ GDGDE+DE+
Subjt:  NIPSFMVRVDSQKHIDFSLTSPFGGGR-----------SCQKAA-GDGDEEDED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCACGTGAATATGGACTTCGCTGTAAAAGGGCTATGGAGGGTTCAATATGCGCTGAGCCGAATCCGTAATAACGCAAGAATGCTTTTAACTCTTGATGAAAAATC
CACAATTTTTCTTGAGCGTCGTCTCCAAACACTTGTATTCAAGTCTGGAATGGCAAAGTCTATTCACCATGCTAGAGTGCTTATCAGACAGAGGCATATAAGGCAGGTGG
TTAACATCCCTTCTTTCATGGTGAGAGTCGATTCTCAAAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGAGGTGGTCGCAGCTGCCAGAAGGCTGCTGGAGATGGA
GATGAAGAAGATGAGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCACGTGAATATGGACTTCGCTGTAAAAGGGCTATGGAGGGTTCAATATGCGCTGAGCCGAATCCGTAATAACGCAAGAATGCTTTTAACTCTTGATGAAAAATC
CACAATTTTTCTTGAGCGTCGTCTCCAAACACTTGTATTCAAGTCTGGAATGGCAAAGTCTATTCACCATGCTAGAGTGCTTATCAGACAGAGGCATATAAGGCAGGTGG
TTAACATCCCTTCTTTCATGGTGAGAGTCGATTCTCAAAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGAGGTGGTCGCAGCTGCCAGAAGGCTGCTGGAGATGGA
GATGAAGAAGATGAGGATTGA
Protein sequenceShow/hide protein sequence
MVHVNMDFAVKGLWRVQYALSRIRNNARMLLTLDEKSTIFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRSCQKAAGDG
DEEDED