CuGenDBv2

Gene ID	Tan0005356
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG05:49048508..49050147
RNA-Seq Expression	Tan0005356
Synteny	Tan0005356
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-87

89.56

Show/hide

Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYMLVYG+KDLILTGY D DFQTDKDSRKSTSGSVFTLNGGA+VWRS+KQGCIADSTME EYVAACE AKE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNI DPFTKTLTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-87

89.56

Show/hide

Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYMLVYG+KDLILTGY D DFQTDKDSRKSTSGSVFTLNGGA+VWRS+KQGCIADSTME EYVAACE AKE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNI DPFTKTLTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-87

89.56

Show/hide

Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYMLVYG+KDLILTGY D DFQTDKDSRKSTSGSVFTLNGGA+VWRS+KQGCIADSTME EYVAACE AKE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNI DPFTKTLTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

6.9e-86

88.46

Show/hide

Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYMLVYG+KDLILTGY D DFQTDKDSRKSTSGSVFTLN GA+VWRS+KQGCIADSTME EYVAACE AKE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNI DPFTK LTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

TYK10337.1 gag/pol protein [Cucumis melo var. makuwa]

4.1e-86

88.46

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Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYML+YG+KDLILTGY + DFQTDKDS+KSTSGSVFTLN GA+VWRS+KQGCIADSTMEVEYVAACEV KE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKM4 Gag/pol protein

8.0e-88

89.56

Show/hide

Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYMLVYG+KDLILTGY D DFQTDKDSRKSTSGSVFTLNGGA+VWRS+KQGCIADSTME EYVAACE AKE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNI DPFTKTLTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

A0A5A7TZD0 Gag/pol protein

6.1e-88

89.56

Show/hide

Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYMLVYG+KDLILTGY D DFQTDKDSRKSTSGSVFTLNGGA+VWRS+KQGCIADSTME EYVAACE AKE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNI DPFTKTLTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

A0A5A7UYE8 Gag/pol protein

6.1e-88

89.56

Show/hide

Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYMLVYG+KDLILTGY D DFQTDKDSRKSTSGSVFTLNGGA+VWRS+KQGCIADSTME EYVAACE AKE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNI DPFTKTLTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

A0A5A7V1F5 Gag/pol protein

3.4e-86

88.46

Show/hide

Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYMLVYG+KDLILTGY D DFQTDKDSRKSTSGSVFTLN GA+VWRS+KQGCIADSTME EYVAACE AKE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNI DPFTK LTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

A0A5D3CEF2 Gag/pol protein

2.0e-86

88.46

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Query:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME
        ++ L++LRRTRDYML+YG+KDLILTGY + DFQTDKDS+KSTSGSVFTLN GA+VWRS+KQGCIADSTMEVEYVAACEV KE VWLRKFL DLEVVPNM 
Subjt:  EMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNME

Query:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
         PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV VTKIA EHNIVDPFTKTLTAKVFEGHLESLGLRDMYI
Subjt:  SPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGLRDMYI

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

7.8e-24

35.64

Show/hide

Query:  NTLARAQREESSFKELEEG-EMTLRHLRRTRDYMLVYGSKDLI----LTGYIDFDFQTDKDSRKSTSGSVFTL-NGGAIVWRSVKQGCIADSTMEVEYVA
        N L+R   + +S  EL +  +  LR+L+ T D  L++  K+L     + GY+D D+   +  RKST+G +F + +   I W + +Q  +A S+ E EY+A
Subjt:  NTLARAQREESSFKELEEG-EMTLRHLRRTRDYMLVYGSKDLI----LTGYIDFDFQTDKDSRKSTSGSVFTL-NGGAIVWRSVKQGCIADSTMEVEYVA

Query:  ACEVAKEVVWLRKFLTDLEVVPNMESPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESL
          E  +E +WL+  LT + +   +E+PI +Y DN G ++ +  P  HKR KHI+ KYH  RE VQ   + +  I  E+ + D FTK L A  F    + L
Subjt:  ACEVAKEVVWLRKFLTDLEVVPNMESPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESL

Query:  GL
        GL
Subjt:  GL

P0CV72 Secreted RxLR effector protein 161

3.4e-11

46.43

Show/hide

Query:  LRHLRRTRDYMLVYGSKDLI-LTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWL
        LR+L+ T+ Y L +       L GY D D+  D +SR+STSG +F LNGG + WRS KQ  +A S+ E EY+A  E  +E VWL
Subjt:  LRHLRRTRDYMLVYGSKDLI-LTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.6e-31

42.53

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Query:  LRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNMESPI
        LR+LR T    L +G  D IL GY D D   D D+RKS++G +FT +GGAI W+S  Q C+A ST E EY+AA E  KE++WL++FL +L +    +   
Subjt:  LRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNMESPI

Query:  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGL
         +YCD+  A+  SK    H R KHI+ +YH IRE+V    + V KI+   N  D  TK +    FE   E +G+
Subjt:  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEHNIVDPFTKTLTAKVFEGHLESLGL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

5.2e-15

34.07

Show/hide

Query:  LRHLRRTRDYMLVYGSK-DLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNMESP
        L +++ T    L Y S+ ++ L  + D  FQ+ KD+R+ST+G    L    I W+S KQ  ++ S+ E EY A      E++WL +F  +L++   +  P
Subjt:  LRHLRRTRDYMLVYGSK-DLILTGYIDFDFQTDKDSRKSTSGSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNMESP

Query:  ITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE
          L+CDN+ A+  +     H+R KHIE   H +RE
Subjt:  ITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTGAGATGAACGGAGCGGTCATTGACAAGCAAAGTCAGGTATCGTTCAT
CCTGGAATCTCTTAGAAGAGTTTCTCGCAATTCCGCAAAGAATGCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTCCTTAATGAACTACAGACTTTCCAGACTC
TTATGAAGAATAAGGGACAGGCTGATGGAGAGGCAAATCTGTTTGCCCATTCCAAAAGGTTCCAGAAGGGTTCATCCTTTGGGACTAAGTCCTGTAGCTCATCTTCTGGG
CTTAAGAAGACCCAAAAGAAGAAAATAGAAGGGAAAGGGAAGGCACTTGTTGCTGACAAAGGCAAGGAAAAAGCCAAGCTTGCAAATAAAGGAAAGTGTTTCCACTGCAA
CATGGATGGGCCTTTGGAAGAGAAAGCGCCCCAAAATACCTTGGCACGAGCTCAAAGAGAAGAAAGTTCCTTCAAGGAGCTAGAAGAAGGTGAGATGACGCTTAGGCATC
TAAGGAGAACGAGGGACTATATGCTTGTGTATGGATCTAAGGATCTGATCCTTACTGGATACATTGATTTTGATTTTCAGACCGATAAGGATTCTCGAAAATCCACATCG
GGATCAGTTTTCACCCTTAACGGGGGAGCTATAGTATGGCGAAGCGTCAAGCAAGGATGCATCGCTGACTCCACAATGGAGGTTGAGTATGTCGCTGCTTGTGAAGTAGC
TAAGGAGGTTGTTTGGCTAAGGAAATTCCTTACTGATTTGGAAGTTGTTCCAAATATGGAATCTCCCATCACCTTATACTGTGACAACAGTGGTGCGGTAGCCAATTCGA
AGGAACCTCGCAGCCATAAGCGAGGTAAGCACATCGAGAGGAAGTATCACCTGATTCGAGAGATAGTGCAACGAGGAGATGTGACCGTCACGAAGATCGCTTTGGAGCAC
AATATTGTTGATCCGTTTACAAAGACTCTCACGGCTAAAGTGTTTGAGGGTCATCTGGAAAGTCTGGGTCTACGAGATATGTACATAGGCTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKEGSSVREHVLDLMVHFNVAEMNGAVIDKQSQVSFILESLRRVSRNSAKNAVMNKIEYNLTTLLNELQTFQTLMKNKGQADGEANLFAHSKRFQKGSSFGTKSCSSSSG
LKKTQKKKIEGKGKALVADKGKEKAKLANKGKCFHCNMDGPLEEKAPQNTLARAQREESSFKELEEGEMTLRHLRRTRDYMLVYGSKDLILTGYIDFDFQTDKDSRKSTS
GSVFTLNGGAIVWRSVKQGCIADSTMEVEYVAACEVAKEVVWLRKFLTDLEVVPNMESPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVTVTKIALEH
NIVDPFTKTLTAKVFEGHLESLGLRDMYIG

Tan0005356 (gene) of Snake gourd v1 genome