; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0005372 (gene) of Snake gourd v1 genome

Gene IDTan0005372
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionphotosystem I reaction center subunit IV, chloroplastic-like
Genome locationLG08:18748188..18751546
RNA-Seq ExpressionTan0005372
SyntenyTan0005372
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
InterPro domainsIPR003375 - Photosystem I PsaE, reaction centre subunit IV
IPR008990 - Electron transport accessory-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441802.1 PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo]3.4e-5689.73Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAA-DEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESY
        MAASNLSCIASGVVIPSSTTI+ SSSSRLSS+AFFPKNSNSISRSSRLV+RAAA DEAAPPPPAAA A   A AEEPKPKPAPIGPKRGAKVKILR+ESY
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAA-DEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESY

Query:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++ +
Subjt:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

XP_022937722.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata]4.5e-5689.66Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW
        MAASNLSCIASGV+IPSSTT  ISSSSR SSVAFFPKNS SISRS RLVVRAAADEAA PPP AAAAT DAPAE PKPKPAPIGPKRG KVKILRRESYW
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++ +
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

XP_022965997.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]2.9e-5588.97Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW
        MAASNLSCIASGV+IPSS T  ISSSSR SSVAFFPKNS SISRS RLVVRAAADEAA PPP AAAAT DAPAE PKPKPAPIGPKRG KVKILRRESYW
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++ +
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

XP_023536804.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo]5.0e-5588.28Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW
        MAASNLSCIASGV+IPSS T  ISSSSR SSVAFFPKNS SISRS RLVVRAAADEAA PPP AAAAT DAPAE PKPKPAPIGPKRG KVKILR+ESYW
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++ +
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

XP_038889433.1 photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida]1.3e-5589.04Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAA-DEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESY
        MAASNLSCIASGVVIPSSTTI+ SSSSRLSS+AFFPKNSNSISRSSRLV+RAAA DEAAPPPPAAA A   A AEEPKPKPAPIGPKRGAKVKILR+ESY
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAA-DEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESY

Query:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        WYKDVGSVVTVDQDPNTRYPVVVRF+KVNYASVSTNNYALDE++ +
Subjt:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJQ1 Uncharacterized protein3.5e-5486.9Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW
        MAASNLSCIASGVVIPSSTTI+ SSSSRLSS+AFFPKNSNSISRSSRLV+R A+DEAAPPP  AA A   A  EEPKPKPAPIGPKRGAKVKILR+ESYW
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++ +
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

A0A1S3B3T3 photosystem I reaction center subunit IV, chloroplastic-like1.7e-5689.73Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAA-DEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESY
        MAASNLSCIASGVVIPSSTTI+ SSSSRLSS+AFFPKNSNSISRSSRLV+RAAA DEAAPPPPAAA A   A AEEPKPKPAPIGPKRGAKVKILR+ESY
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAA-DEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESY

Query:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++ +
Subjt:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

A0A6J1CRI6 photosystem I reaction center subunit IV, chloroplastic-like1.2e-5487.59Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW
        MAA+NLSCIASGVVIPSS T  ISSSSRL+SVAFFPKN N ISR  RLV+RAAADEAAPPPP AAAAT DAP EE KPKPAPIGPKRGAKVKILR+ESYW
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEV+ +
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

A0A6J1FC09 photosystem I reaction center subunit IV, chloroplastic-like2.2e-5689.66Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW
        MAASNLSCIASGV+IPSSTT  ISSSSR SSVAFFPKNS SISRS RLVVRAAADEAA PPP AAAAT DAPAE PKPKPAPIGPKRG KVKILRRESYW
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++ +
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

A0A6J1HLT8 photosystem I reaction center subunit IV, chloroplastic-like1.4e-5588.97Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW
        MAASNLSCIASGV+IPSS T  ISSSSR SSVAFFPKNS SISRS RLVVRAAADEAA PPP AAAAT DAPAE PKPKPAPIGPKRG KVKILRRESYW
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++ +
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

SwissProt top hitse value%identityAlignment
P12354 Photosystem I reaction center subunit IV, chloroplastic5.8e-3060.32Show/hide
Query:  TINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYWYKDVGSVVTVDQDPNTRYP
        +I  S + RL      P  + S  RS+RLVVRAA + AA P    AAA+ +  A +   KP PIGPKRG+KV+I+R+ESYWYK VGSVV VDQDP TRYP
Subjt:  TINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYWYKDVGSVVTVDQDPNTRYP

Query:  VVVRFNKVNYASVSTNNYALDEVKSL
        VVVRFNKVNYA+VSTNNYALDE++ +
Subjt:  VVVRFNKVNYASVSTNNYALDEVKSL

Q41228 Photosystem I reaction center subunit IV A, chloroplastic4.0e-3156.55Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW
        MA+ N++  AS  ++ +    + +++SR + + F  KN    S + RLVVR AA+EAAPP  AA A   +AP +    KP PIGPKRG KV+ILR+ESYW
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        YK  GSVV  DQDPNTRYPVVVRFNKVNYA+VSTNNYALDE++ +
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

Q41229 Photosystem I reaction center subunit IV B, chloroplastic2.8e-3257.53Show/hide
Query:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPK-PKPAPIGPKRGAKVKILRRESY
        MA+S+++  ASG ++ +      +++ R S + F    +N+ +   RLVVR AA+EAAPP   AA AT +  A   K  KP PIGPKRG KV++LR+ESY
Subjt:  MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPK-PKPAPIGPKRGAKVKILRRESY

Query:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        WYK VGSVV VDQDPNTRYPVVVRFNKVNYA+VSTNNYALDEV+ +
Subjt:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

Q9S714 Photosystem I reaction center subunit IV B, chloroplastic1.6e-2754.67Show/hide
Query:  LSCIASGVVIPSSTTINISSSSRLSS--VAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAA------TVDAPAEEP--KPKPAPIGPKRGAKVKILR
        ++  A+G ++ ++    I   S  S+  V+F P      S  SRLVVRAA D     PPA A++         APA+ P  K KP PIGPKRG+KVKILR
Subjt:  LSCIASGVVIPSSTTINISSSSRLSS--VAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAA------TVDAPAEEP--KPKPAPIGPKRGAKVKILR

Query:  RESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        +ESYWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDEV+ +
Subjt:  RESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

Q9S831 Photosystem I reaction center subunit IV A, chloroplastic8.9e-3162.04Show/hide
Query:  VIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEA-----APPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYWYKDVGSVV
        V+P++ T    +SS  SSV+F P      +  SRLVVRAA D A     +   PAAAAA   A A   KPKP PIGPKRG+KVKILRRESYW+K+VGSVV
Subjt:  VIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEA-----APPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYWYKDVGSVV

Query:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
         VDQDP TRYPVVVRF KVNYA++STNNYALDEV+ +
Subjt:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

Arabidopsis top hitse value%identityAlignment
AT2G20260.1 photosystem I subunit E-21.1e-2854.67Show/hide
Query:  LSCIASGVVIPSSTTINISSSSRLSS--VAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAA------TVDAPAEEP--KPKPAPIGPKRGAKVKILR
        ++  A+G ++ ++    I   S  S+  V+F P      S  SRLVVRAA D     PPA A++         APA+ P  K KP PIGPKRG+KVKILR
Subjt:  LSCIASGVVIPSSTTINISSSSRLSS--VAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAA------TVDAPAEEP--KPKPAPIGPKRGAKVKILR

Query:  RESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
        +ESYWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDEV+ +
Subjt:  RESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL

AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein6.3e-3262.04Show/hide
Query:  VIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEA-----APPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYWYKDVGSVV
        V+P++ T    +SS  SSV+F P      +  SRLVVRAA D A     +   PAAAAA   A A   KPKP PIGPKRG+KVKILRRESYW+K+VGSVV
Subjt:  VIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEA-----APPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYWYKDVGSVV

Query:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL
         VDQDP TRYPVVVRF KVNYA++STNNYALDEV+ +
Subjt:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTCTAACCTTTCATGCATTGCTTCTGGGGTGGTCATTCCATCTTCAACCACCATTAATATTTCTTCCTCTTCTAGGTTATCTTCTGTCGCTTTCTTCCCCAA
AAATTCCAACTCCATTTCTAGATCATCTAGATTGGTTGTCCGTGCCGCTGCCGACGAGGCTGCTCCACCACCCCCCGCTGCCGCTGCTGCCACCGTCGATGCCCCGGCCG
AAGAGCCCAAGCCTAAGCCTGCCCCAATTGGTCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGGAGAGAGTCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTT
GACCAGGACCCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGGTAAAGAGCTTAAACAG
GACATTTGGAGACATTATGGATCATTTGGGATCAAATCGGGGTTTTTGGAGCTCGAAATAA
mRNA sequenceShow/hide mRNA sequence
AAAACAACTGATTCCTTCTCCTTCAATATGTGGTTATGATTATTTCATTGGTTTATCTTATTGTTCAAACCCCATCTTCAAACCATTAACACTCAAACACTTTCTTCACT
TTCAGCTAAAGAAAGAGAGATTGAGAGACATAGCATTGGCCATGGCTGCCTCTAACCTTTCATGCATTGCTTCTGGGGTGGTCATTCCATCTTCAACCACCATTAATATT
TCTTCCTCTTCTAGGTTATCTTCTGTCGCTTTCTTCCCCAAAAATTCCAACTCCATTTCTAGATCATCTAGATTGGTTGTCCGTGCCGCTGCCGACGAGGCTGCTCCACC
ACCCCCCGCTGCCGCTGCTGCCACCGTCGATGCCCCGGCCGAAGAGCCCAAGCCTAAGCCTGCCCCAATTGGTCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGGAGAG
AGTCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGACCCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCA
ACAAACAACTATGCACTTGATGAGGTAAAGAGCTTAAACAGGACATTTGGAGACATTATGGATCATTTGGGATCAAATCGGGGTTTTTGGAGCTCGAAATAACATCAAAT
GGAAGAAAAATGGACAAATCTAGCCAATTGATCTGAGGTGATGGTGTTGCAACGCCATTCGTGTTGCTTTTGTGCGTTGAAGACCCGTGCAGGTAGCGTTGCAAAGCAGC
GTCGCAACGCTACTTTGCAGGGTCACAACGCTACTTCGATAAGGAGGCACGCGCTTAGGGTAGCGGTGTTGCAACGCTGCCCTCAGCGTCGCAACGTTGCCGAGAATTTC
TTTATTTATTCTGCGCCTAGGGCATAGCGTTGCAACGCTGTGTCGATTGCACTATAAATACAACATGATTCTTGGCAAAGGAAGCCGAAATTGATAGAAATTGTACCCTA
AATTCAAAATACATTCTTCAAGAGGAGAAAGAAGAG
Protein sequenceShow/hide protein sequence
MAASNLSCIASGVVIPSSTTINISSSSRLSSVAFFPKNSNSISRSSRLVVRAAADEAAPPPPAAAAATVDAPAEEPKPKPAPIGPKRGAKVKILRRESYWYKDVGSVVTV
DQDPNTRYPVVVRFNKVNYASVSTNNYALDEVKSLNRTFGDIMDHLGSNRGFWSSK