CuGenDBv2

Gene ID	Tan0005394
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG02:45242943..45243524
RNA-Seq Expression	Tan0005394
Synteny	Tan0005394
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-68

68.39

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL EECPQ+PA NA + ++E ++  W KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQ
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQ S QI++++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVI+E SQVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-69

68.91

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        M+S+ + +L +D+L G N+  WK+ +NT+L++DDLRFVL EECPQ+PA NA Q ++E ++  W KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQ
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQ S QI++++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVI+E SQVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]

5.4e-69

70.98

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        MSSSIIALLK D+LTGEN+ TWKS LN ILV+ DLRFVL EECP  P +NA Q +K+A+DH W KANDKA +Y+LAS+S++L+KKHE MV+AR+IM SL+
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQPS QI+ E++KYVYN+RMKEG SVREHVL ++V+FNVAEMN A+ +E+SQVS+IL+SLSKSFLQF +N  MNKIEYN+TTLL ELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-68

68.39

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL EECPQ+PA NA + ++E ++  W KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQ
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQ S QI++++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVI+E SQVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]

5.4e-69

70.98

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        MSSSIIALLK D+LTGEN+ TWKS LN ILV+ DLRFVL EECP  P +NA Q +K+A+DH W KANDKA +Y+LAS+S++L+KKHE MV+AR+IM SL+
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQPS QI+ E++KYVYN+RMKEG SVREHVL ++V+FNVAEMN A+ +E+SQVS+IL+SLSKSFLQF +N  MNKIEYN+TTLL ELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

7.6e-69

68.39

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL EECPQ+PA NA + ++E ++  W KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQ
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQ S QI++++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVI+E SQVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

A0A5A7V6N0 Gag/pol protein

3.4e-69

68.91

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        M+S+ + +L +D+L G N+  WK+ +NT+L++DDLRFVL EECPQ+PA NA Q ++E ++  W KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQ
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQ S QI++++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVI+E SQVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

A0A5A7VA67 Gag/pol protein

2.6e-69

70.98

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        MSSSIIALLK D+LTGEN+ TWKS LN ILV+ DLRFVL EECP  P +NA Q +K+A+DH W KANDKA +Y+LAS+S++L+KKHE MV+AR+IM SL+
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQPS QI+ E++KYVYN+RMKEG SVREHVL ++V+FNVAEMN A+ +E+SQVS+IL+SLSKSFLQF +N  MNKIEYN+TTLL ELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

A0A5D3CPJ6 Gag/pol protein

7.6e-69

68.39

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL EECPQ+PA NA + ++E ++  W KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQ
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQ S QI++++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVI+E SQVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

A0A5D3D0D9 Gag/pol protein

2.6e-69

70.98

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ
        MSSSIIALLK D+LTGEN+ TWKS LN ILV+ DLRFVL EECP  P +NA Q +K+A+DH W KANDKA +Y+LAS+S++L+KKHE MV+AR+IM SL+
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQ

Query:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF
        EMFGQPS QI+ E++KYVYN+RMKEG SVREHVL ++V+FNVAEMN A+ +E+SQVS+IL+SLSKSFLQF +N  MNKIEYN+TTLL ELQTF
Subjt:  EMFGQPSGQIRNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGTCCTCTATCATAGCCTTACTTAAAAGCGACCGTTTAACTGGTGAGAATTTTACTACGTGGAAATCCAACCTGAATACGATTCTCGTTGTTGACGACCTACGGTT
TGTACTGTCTGAGGAATGTCCACAAATCCCTGCTCGTAATGCTCCTCAATGCATTAAGGAGGCGCACGATCACATTTGGATCAAGGCCAATGATAAGGCCAAGGTCTACA
TTTTGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGCTGCAGGAAATGTTTGGACAACCGTCTGGACAGATT
CGAAACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGGAGGGGTCATCCGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTGAGATGAACGG
AGCGGTCATTGAGGAGCAAAGTCAGGTATCGTTCATCCTTGAGTCTCTTTCGAAGAGTTTTCTGCAATTCCGCAACAATGCGGTGATGAACAAGATAGAGTATAACCTGA
CTACTCTCCTTAATGAACTACAAACTTTCTAG

mRNA sequence

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Protein sequence

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MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLSEECPQIPARNAPQCIKEAHDHIWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQEMFGQPSGQI
RNESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIEEQSQVSFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTF

Tan0005394 (gene) of Snake gourd v1 genome