CuGenDBv2

Gene ID	Tan0005401
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ATP-dependent helicase/deoxyribonuclease subunit B
Genome location	LG08:73800261..73810792
RNA-Seq Expression	Tan0005401
Synteny	Tan0005401
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009555 - pollen development (biological process) GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004137681.1 uncharacterized protein LOC101203220 [Cucumis sativus]

1.5e-115

94.04

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Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M + P LSLL+ LLSL PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQS+IDVTSGLYVLFGSGLTL+FI+S+YILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_008442332.1 PREDICTED: uncharacterized protein LOC103486235 isoform X2 [Cucumis melo]

2.5e-115

94.5

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Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M   P LSLL+ LLSL PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY DTHPHI+KQFWDQQHWPKHILVRYTWEEQS+IDVTSGLYVLFGSGLTL+FI+SIYILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_022157271.1 uncharacterized protein LOC111024020 isoform X1 [Momordica charantia]

2.5e-115

93.58

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Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGE   LSLLVLLL L PIS+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIYIDTHPHISKQFWDQQHWPKH+LVRYTWEEQS+IDVTSGLYVLFGSGLTLTFI+SIYILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVE+SIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_023541018.1 uncharacterized protein LOC111801222 [Cucurbita pepo subsp. pepo]

6.2e-114

92.66

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Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGE PFL LLV L SL P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY+D+HPHIS+QFWDQQHWPKHILVRYTWEEQS+IDVTSGLYVLFGSGL LTFI+SIYILQSSK+KLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_038903796.1 uncharacterized protein LOC120090293 isoform X1 [Benincasa hispida]

5.6e-115

94.04

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Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGE P LSLLV LLSL PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINR+S
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY DTHPHISK+FWDQQHWPKHILVRYTWEEQS+IDV SGLYVLFGSGLTL+FI+SI+ILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIP VGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9R0 Uncharacterized protein

7.2e-116

94.04

Show/hide

Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M + P LSLL+ LLSL PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQS+IDVTSGLYVLFGSGLTL+FI+S+YILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A1S3B641 uncharacterized protein LOC103486235 isoform X2

1.2e-115

94.5

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Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M   P LSLL+ LLSL PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY DTHPHI+KQFWDQQHWPKHILVRYTWEEQS+IDVTSGLYVLFGSGLTL+FI+SIYILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A5A7TLX6 Uncharacterized protein

1.2e-115

94.5

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Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M   P LSLL+ LLSL PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY DTHPHI+KQFWDQQHWPKHILVRYTWEEQS+IDVTSGLYVLFGSGLTL+FI+SIYILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A6J1DXJ6 uncharacterized protein LOC111024020 isoform X1

1.2e-115

93.58

Show/hide

Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGE   LSLLVLLL L PIS+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIYIDTHPHISKQFWDQQHWPKH+LVRYTWEEQS+IDVTSGLYVLFGSGLTLTFI+SIYILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVE+SIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A6J1I3H9 uncharacterized protein LOC111470204

3.0e-114

92.66

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Query:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGE PFL LLV L SL P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY+D+HPHIS+QFWDQQHWPKHILVRYTWEEQS+IDVTSGLYVLFGSGL LTFI+SIYILQSSK+KLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G51610.1 unknown protein

4.9e-93

75.6

Show/hide

Query:  FLSLLVLLLSLFP-ISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVP
        F+  LVL+   FP +S AYRPGDIV MSKMGQYHSSRT WHD+IG+HCPIF VNREVL+PI KP+GYTG DPYKI FQVG EKFL+ WLLVINRKS+EVP
Subjt:  FLSLLVLLLSLFP-ISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVP

Query:  MIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFVRETV
        MIDV+LRYSG DL GVTA+V+DMPH Y++THP I KQFWD QHWPKH+LVRYTW+EQS+IDV+SG YVLFGS LT +F++SIY+LQSS++KLARFVRETV
Subjt:  MIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFVRETV

Query:  VESSIPGVG
        VESS   VG
Subjt:  VESSIPGVG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAGAAGCTCCATTTCTGTCGCTCCTAGTTTTGCTATTGTCGCTGTTTCCGATTTCGCTGGCTTACAGGCCTGGGGACATCGTTCCGATGAGTAAGATGGGACAATA
TCACTCGTCGAGAACAGTTTGGCACGATATGATCGGTCGACATTGTCCAATTTTTGGCGTCAATCGCGAGGTTTTGGTTCCTATACCGAAGCCAGTCGGCTACACAGGAG
CTGATCCGTATAAAATATCCTTTCAAGTTGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATAAATCGCAAAAGTGCAGAAGTCCCAATGATTGATGTCCACTTG
AGATACTCTGGAAGTGATCTTCATGGTGTGACTGCCAAAGTAGTGGATATGCCTCATATCTATATTGATACACATCCACATATTAGCAAACAATTCTGGGATCAACAGCA
TTGGCCAAAGCATATCCTTGTCCGTTATACATGGGAGGAGCAATCGGACATAGATGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTTTGACGCTAACTTTTATTA
TGTCAATTTACATATTGCAATCGTCGAAGGACAAGTTAGCAAGGTTTGTAAGAGAAACAGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTTGAATAG

mRNA sequence

Show/hide mRNA sequence

CGCCAGTCCAAAAGAGGAAGAAGGGGGAAGCGATTCTATAGAGCTCCAATTCTTCGAACGATTGGGCAAATCACCGTCGACGATGGGAGAAGCTCCATTTCTGTCGCTCC
TAGTTTTGCTATTGTCGCTGTTTCCGATTTCGCTGGCTTACAGGCCTGGGGACATCGTTCCGATGAGTAAGATGGGACAATATCACTCGTCGAGAACAGTTTGGCACGAT
ATGATCGGTCGACATTGTCCAATTTTTGGCGTCAATCGCGAGGTTTTGGTTCCTATACCGAAGCCAGTCGGCTACACAGGAGCTGATCCGTATAAAATATCCTTTCAAGT
TGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATAAATCGCAAAAGTGCAGAAGTCCCAATGATTGATGTCCACTTGAGATACTCTGGAAGTGATCTTCATGGTG
TGACTGCCAAAGTAGTGGATATGCCTCATATCTATATTGATACACATCCACATATTAGCAAACAATTCTGGGATCAACAGCATTGGCCAAAGCATATCCTTGTCCGTTAT
ACATGGGAGGAGCAATCGGACATAGATGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTTTGACGCTAACTTTTATTATGTCAATTTACATATTGCAATCGTCGAA
GGACAAGTTAGCAAGGTTTGTAAGAGAAACAGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTTGAATAGACTCTAGTCAGTTAGGTTCCATGTCCAGTTC
ACGGAAACTTACATATTAAGCTCGGCAAAATTCACATCTCTATCAAATTGGTTTCACTTAACCGACAACGTGAGCCGCCGAAGTGGGTTCAAAAGCGGTATGCAACTTGC
ATGACACATTTCTTTTCGGGACAAAATCCAAACTCTTTATCTGTAAGGTGTGTGTAACTTGGAAGACAATCGGTTTATCTCAAAAAAGTCTAATATTACAGAGACCCTTG
TTTTTATTTTCTAGGTCGGGGAAGAATCTTTTTGTAAATGACACTAAAAGACTAGTTGGGTAATTTCAATTGCTGTGTTACCTTCTACTTTGTTTTATTTCCTTATAGCT
TTCTACTTTCTGACCCTACTCTATTTCTCCATTATCTCCTTTGCAAGCGTTAATTTTATTTTAAAATATGAATTTGATACTTATATTATTTTGATTCTTAAATTTTATAA
TATTTTATTCTAGTTCCAACTTTCTAGTATTCTATTCTAATTTTTTATCTCCACATGAAAAGTTACTTTAGTCTTTATTTATTTCTTTTTCTTCTTATTAATCGTCTAAT
ATGAACTCATTTCTTAAATCAATATATCTGTCTATTATATATAAATTCAAACGTTTATTTTTGTAAACAGGCAAATCAATAAAATGCATATATATAAATTCAAACTTTTT
ATTAAATCACCAATCAACCCATAAGCTTAACCTCATAAGTTGAGATAAATTTAATTATATCAATAGTTTAACGTCTCCTAAAC

Protein sequence

Show/hide protein sequence

MGEAPFLSLLVLLLSLFPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPMIDVHL
RYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSDIDVTSGLYVLFGSGLTLTFIMSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

Tan0005401 (gene) of Snake gourd v1 genome