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Tan0005461 (gene) of Snake gourd v1 genome

Gene IDTan0005461
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG11:61471347..61471568
RNA-Seq ExpressionTan0005461
SyntenyTan0005461
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035138.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.9e-1764.29Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSLVDDR
        ++V EYEKK+TELS+YA  IVA+E DRC+RFE GLR EIRTPVTA ++W  FS+LVET LRVE+S+ +++
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSLVDDR

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.0e-1766.67Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL
        MTVT+YEKK+TELSKYA+ ++ +E++RCKRFE+GL+ EIRTPVT  ++W +FSKLVE  LRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-1769.7Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL
        MTV EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]4.0e-1766.67Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL
        MT+ EYEKK+TELS YA+ ++ +E++RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]3.1e-1769.7Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL
        MTV EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL

TrEMBL top hitse value%identityAlignment
A0A5A7SX06 DNA/RNA polymerases superfamily protein3.3e-1764.29Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSLVDDR
        ++V EYEKK+TELS+YA  IVA+E DRC+RFE GLR EIRTPVTA ++W  FS+LVET LRVE+S+ +++
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSLVDDR

A0A5A7T1M0 Reverse transcriptase1.5e-1769.7Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL
        MTV EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL

A0A5A7UZM6 Gag protease polyprotein-like protein2.0e-1766.67Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL
        MT+ EYEKK+TELS YA+ ++ +E++RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL

A0A5D3BB91 Reverse transcriptase1.5e-1769.7Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL
        MTV EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.0e-1766.67Show/hide
Query:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL
        MTVT+YEKK+TELSKYA+ ++ +E++RCKRFE+GL+ EIRTPVT  ++W +FSKLVE  LRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTACGAAC
AGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGTTGAGACGACATTACGGGTAGAGCGAAGCCTGGTAGATGACAGAATGGGAAAAT
GA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTACGAAC
AGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGTTGAGACGACATTACGGGTAGAGCGAAGCCTGGTAGATGACAGAATGGGAAAAT
GA
Protein sequenceShow/hide protein sequence
MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSLVDDRMGK