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Tan0005463 (gene) of Snake gourd v1 genome

Gene IDTan0005463
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy1-copia retrotransposon protein
Genome locationLG08:61852365..61852733
RNA-Seq ExpressionTan0005463
SyntenyTan0005463
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049792.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.1e-2252.03Show/hide
Query:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCG
        ML+  S  +LP+LSKLEPLDG+NYR WSQKLLI FE+ EVDYVL  D     P   T            +   A  D V+  +++D  +K+ KDNKTV G
Subjt:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCG

Query:  HLLNHVTDSLFDLFVVQKSTKVI
        HLLNH++D +FDLFVVQKS K I
Subjt:  HLLNHVTDSLFDLFVVQKSTKVI

KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.2e-2152.54Show/hide
Query:  SGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCGHLLNH
        S  +LP+LSKLEPLDG+NYR WSQKLLI FE+ EVDYVL  D     P   T            +   A  D V+  +++D  +K+ KDNKTV GHLLNH
Subjt:  SGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCGHLLNH

Query:  VTDSLFDLFVVQKSTKVI
        ++D +FDLFVVQKS K I
Subjt:  VTDSLFDLFVVQKSTKVI

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.2e-2152.54Show/hide
Query:  SGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCGHLLNH
        S  +LP+LSKLEPLDG+NYR WSQKLLI FE+ EVDYVL  D     P   T            +   A  D V+  +++D  +K+ KDNKTV GHLLNH
Subjt:  SGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCGHLLNH

Query:  VTDSLFDLFVVQKSTKVI
        ++D +FDLFVVQKS K I
Subjt:  VTDSLFDLFVVQKSTKVI

TYK23072.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.1e-2252.03Show/hide
Query:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCG
        ML+  S  +LP+LSKLEPLDG+NYR WSQKLLI FE+ EVDYVL  D     P   T            +   A  D V+  +++D  +K+ KDNKTV G
Subjt:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCG

Query:  HLLNHVTDSLFDLFVVQKSTKVI
        HLLNH++D +FDLFVVQKS K I
Subjt:  HLLNHVTDSLFDLFVVQKSTKVI

XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]5.3e-2250.74Show/hide
Query:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFDKLEGPNVATIADMKKSIVVVEIDLAANVD--------------FVQSKKLVDG
        M  I+SG VL +LSKLEPLDGSNYR WSQKLLI FE+ E+DY++     +   V T A    +  V    + A V                V        
Subjt:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFDKLEGPNVATIADMKKSIVVVEIDLAANVD--------------FVQSKKLVDG

Query:  DDKFEKDNKTVCGHLLNHVTDSLFDLFVVQKSTKVI
         DKFEKDNKTV GHLLNH+ DSLFDLFVVQKS KVI
Subjt:  DDKFEKDNKTVCGHLLNHVTDSLFDLFVVQKSTKVI

TrEMBL top hitse value%identityAlignment
A0A5A7SKK3 Ty1-copia retrotransposon protein5.8e-2252.54Show/hide
Query:  SGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCGHLLNH
        S  +LP+LSKLEPLDG+NYR WSQKLLI FE+ EVDYVL  D     P   T            +   A  D V+  +++D  +K+ KDNKTV GHLLNH
Subjt:  SGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCGHLLNH

Query:  VTDSLFDLFVVQKSTKVI
        ++D +FDLFVVQKS K I
Subjt:  VTDSLFDLFVVQKSTKVI

A0A5A7U1X6 Ty1-copia retrotransposon protein2.0e-2252.03Show/hide
Query:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCG
        ML+  S  +LP+LSKLEPLDG+NYR WSQKLLI FE+ EVDYVL  D     P   T            +   A  D V+  +++D  +K+ KDNKTV G
Subjt:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCG

Query:  HLLNHVTDSLFDLFVVQKSTKVI
        HLLNH++D +FDLFVVQKS K I
Subjt:  HLLNHVTDSLFDLFVVQKSTKVI

A0A5D3C5T2 Ty1-copia retrotransposon protein5.8e-2252.54Show/hide
Query:  SGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCGHLLNH
        S  +LP+LSKLEPLDG+NYR WSQKLLI FE+ EVDYVL  D     P   T            +   A  D V+  +++D  +K+ KDNKTV GHLLNH
Subjt:  SGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCGHLLNH

Query:  VTDSLFDLFVVQKSTKVI
        ++D +FDLFVVQKS K I
Subjt:  VTDSLFDLFVVQKSTKVI

A0A5D3DHN5 Ty1-copia retrotransposon protein2.0e-2252.03Show/hide
Query:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCG
        ML+  S  +LP+LSKLEPLDG+NYR WSQKLLI FE+ EVDYVL  D     P   T            +   A  D V+  +++D  +K+ KDNKTV G
Subjt:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFD-KLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCG

Query:  HLLNHVTDSLFDLFVVQKSTKVI
        HLLNH++D +FDLFVVQKS K I
Subjt:  HLLNHVTDSLFDLFVVQKSTKVI

A0A6J1DWN1 uncharacterized protein LOC1110251972.6e-2250.74Show/hide
Query:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFDKLEGPNVATIADMKKSIVVVEIDLAANVD--------------FVQSKKLVDG
        M  I+SG VL +LSKLEPLDGSNYR WSQKLLI FE+ E+DY++     +   V T A    +  V    + A V                V        
Subjt:  MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFDKLEGPNVATIADMKKSIVVVEIDLAANVD--------------FVQSKKLVDG

Query:  DDKFEKDNKTVCGHLLNHVTDSLFDLFVVQKSTKVI
         DKFEKDNKTV GHLLNH+ DSLFDLFVVQKS KVI
Subjt:  DDKFEKDNKTVCGHLLNHVTDSLFDLFVVQKSTKVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATGATCAAATCCGGAATGGTGTTGCCAAATCTTTCTAAATTGGAACCACTAGACGGATCCAACTACCGCCATTGGTCGCAAAAACTTTTGATCTTGTTTGAAAA
ATTCGAGGTCGACTACGTCCTACTATTCGACAAATTGGAGGGCCCTAATGTTGCAACAATTGCAGATATGAAGAAGTCCATTGTTGTTGTCGAGATTGATCTGGCTGCTA
ATGTCGATTTCGTCCAATCAAAAAAGCTTGTTGATGGGGATGATAAGTTCGAGAAAGACAACAAGACAGTCTGCGGCCATCTCCTAAACCACGTGACCGACTCTTTGTTC
GATCTTTTTGTCGTCCAAAAATCTACAAAGGTAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGATGATCAAATCCGGAATGGTGTTGCCAAATCTTTCTAAATTGGAACCACTAGACGGATCCAACTACCGCCATTGGTCGCAAAAACTTTTGATCTTGTTTGAAAA
ATTCGAGGTCGACTACGTCCTACTATTCGACAAATTGGAGGGCCCTAATGTTGCAACAATTGCAGATATGAAGAAGTCCATTGTTGTTGTCGAGATTGATCTGGCTGCTA
ATGTCGATTTCGTCCAATCAAAAAAGCTTGTTGATGGGGATGATAAGTTCGAGAAAGACAACAAGACAGTCTGCGGCCATCTCCTAAACCACGTGACCGACTCTTTGTTC
GATCTTTTTGTCGTCCAAAAATCTACAAAGGTAATTTAG
Protein sequenceShow/hide protein sequence
MLMIKSGMVLPNLSKLEPLDGSNYRHWSQKLLILFEKFEVDYVLLFDKLEGPNVATIADMKKSIVVVEIDLAANVDFVQSKKLVDGDDKFEKDNKTVCGHLLNHVTDSLF
DLFVVQKSTKVI