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Tan0005508 (gene) of Snake gourd v1 genome

Gene IDTan0005508
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionpathogenesis-related gene 1
Genome locationLG02:17152212..17152700
RNA-Seq ExpressionTan0005508
SyntenyTan0005508
Gene Ontology termsGO:0005615 - extracellular space (cellular component)
InterPro domainsIPR018244 - Allergen V5/Tpx-1-related, conserved site
IPR035940 - CAP superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN43828.1 hypothetical protein Csa_017229 [Cucumis sativus]5.5e-2769.89Show/hide
Query:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKIISSRRLQPARWCTPKSFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
        MSKMALA  LSALC++ L LTPI +AQ++P+DF +AHNAL LKIIS RRL+        SFLVGCA+VKC+NNWSLVSCNYSP+GNVVGE PY
Subjt:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKIISSRRLQPARWCTPKSFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

XP_004137081.1 basic form of pathogenesis-related protein 1 [Cucumis sativus]1.1e-1437.74Show/hide
Query:  MALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKI------------------ISSR---------------RLQPAR-----------WCTPK
        MALA  LSALC++ L LTPI +AQ++P+DF +AHNA+  K+                  I+S+                L  A            W   K
Subjt:  MALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKI------------------ISSR---------------RLQPAR-----------WCTPK

Query:  -------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
                                 SFLVGCA+VKC+NNWSLVSCNYSP+GNVVGE PY
Subjt:  -------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

XP_004137082.3 basic form of pathogenesis-related protein 1 [Cucumis sativus]1.0e-1234.97Show/hide
Query:  MSKMALANILSALCLIGLTLT-PITVAQSAPKDFVNAHNALMLKI----------------------ISSRRLQPAR----------------------W
        MS MAL+N  S++CLI LTLT P+ VA + P+++V+AHNA+  ++                      IS+  +  +                       W
Subjt:  MSKMALANILSALCLIGLTLT-PITVAQSAPKDFVNAHNALMLKI----------------------ISSRRLQPAR----------------------W

Query:  CTPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
           K                         SFL+GCA++KC+NNWSLVSCNYSPAGNVVGELPY
Subjt:  CTPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

XP_008455067.1 PREDICTED: pathogenesis-related protein 1A-like [Cucumis melo]7.0e-1433.95Show/hide
Query:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKI--------------------------------------------ISSRRLQPARWC
        MSKMAL+NI S++CLI LTL P+ VA + P+++V+AHNA+  ++                                            + +       W 
Subjt:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKI--------------------------------------------ISSRRLQPARWC

Query:  TPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
          K                         SFL+GCA++KC+NNWSLVSCNYSPAGNV GELPY
Subjt:  TPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

XP_016901700.1 PREDICTED: pathogenesis-related protein PR-1 type-like [Cucumis melo]5.3e-1438.69Show/hide
Query:  MALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKIISSRRLQPA---------------------RWCTPK-----------------------
        MAL   LS LC++ LTLTPI VAQ++P+DFV+AHNA+  KI +   +                         W   +                       
Subjt:  MALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKIISSRRLQPA---------------------RWCTPK-----------------------

Query:  --SFLVGCASVKCENNW-SLVSCNYSPAGNVVGELPY
          SFLVGCA+VKC++NW S++SCNYSP+ NVVGE PY
Subjt:  --SFLVGCASVKCENNW-SLVSCNYSPAGNVVGELPY

TrEMBL top hitse value%identityAlignment
A0A0A0K2V2 Uncharacterized protein2.7e-2769.89Show/hide
Query:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKIISSRRLQPARWCTPKSFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
        MSKMALA  LSALC++ L LTPI +AQ++P+DF +AHNAL LKIIS RRL+        SFLVGCA+VKC+NNWSLVSCNYSP+GNVVGE PY
Subjt:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKIISSRRLQPARWCTPKSFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

A0A0A0K4C6 SCP domain-containing protein4.9e-1334.97Show/hide
Query:  MSKMALANILSALCLIGLTLT-PITVAQSAPKDFVNAHNALMLKI----------------------ISSRRLQPAR----------------------W
        MS MAL+N  S++CLI LTLT P+ VA + P+++V+AHNA+  ++                      IS+  +  +                       W
Subjt:  MSKMALANILSALCLIGLTLT-PITVAQSAPKDFVNAHNALMLKI----------------------ISSRRLQPAR----------------------W

Query:  CTPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
           K                         SFL+GCA++KC+NNWSLVSCNYSPAGNVVGELPY
Subjt:  CTPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

A0A1S3C055 pathogenesis-related protein 1A-like3.4e-1433.95Show/hide
Query:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKI--------------------------------------------ISSRRLQPARWC
        MSKMAL+NI S++CLI LTL P+ VA + P+++V+AHNA+  ++                                            + +       W 
Subjt:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKI--------------------------------------------ISSRRLQPARWC

Query:  TPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
          K                         SFL+GCA++KC+NNWSLVSCNYSPAGNV GELPY
Subjt:  TPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

A0A1S4E137 pathogenesis-related protein PR-1 type-like2.6e-1438.69Show/hide
Query:  MALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKIISSRRLQPA---------------------RWCTPK-----------------------
        MAL   LS LC++ LTLTPI VAQ++P+DFV+AHNA+  KI +   +                         W   +                       
Subjt:  MALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKIISSRRLQPA---------------------RWCTPK-----------------------

Query:  --SFLVGCASVKCENNW-SLVSCNYSPAGNVVGELPY
          SFLVGCA+VKC++NW S++SCNYSP+ NVVGE PY
Subjt:  --SFLVGCASVKCENNW-SLVSCNYSPAGNVVGELPY

A0A5D3C911 Pathogenesis-related protein 1A-like3.4e-1433.95Show/hide
Query:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKI--------------------------------------------ISSRRLQPARWC
        MSKMAL+NI S++CLI LTL P+ VA + P+++V+AHNA+  ++                                            + +       W 
Subjt:  MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKI--------------------------------------------ISSRRLQPARWC

Query:  TPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
          K                         SFL+GCA++KC+NNWSLVSCNYSPAGNV GELPY
Subjt:  TPK-------------------------SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

SwissProt top hitse value%identityAlignment
P04284 Pathogenesis-related leaf protein 61.0e-0447.06Show/hide
Query:  SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
        S  +GC   +C N W  +SCNY P GN +G+ PY
Subjt:  SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

P07053 Pathogenesis-related protein 1B7.2e-0661.76Show/hide
Query:  SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
        S  VGCA VKC N   +VSCNY P GNV+G+ PY
Subjt:  SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

P09042 Pathogenesis-related protein 1C2.1e-0558.82Show/hide
Query:  SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
        S  VGCA V+C N   +VSCNY P GNV+G+ PY
Subjt:  SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

P33154 Pathogenesis-related protein 12.1e-0554.29Show/hide
Query:  KSFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
        KS  +GCA V+C N  +++SCNY P GN V E PY
Subjt:  KSFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

Q04108 Pathogenesis-related leaf protein 43.6e-0552.94Show/hide
Query:  SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
        S  +GC   +C N W  +SCNY P GN VGE PY
Subjt:  SFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

Arabidopsis top hitse value%identityAlignment
AT2G14610.1 pathogenesis-related gene 11.5e-0654.29Show/hide
Query:  KSFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY
        KS  +GCA V+C N  +++SCNY P GN V E PY
Subjt:  KSFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY

AT4G33710.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein1.3e-0561.29Show/hide
Query:  VGCASVKCENNWSLVSCNYSPAGNVVGELPY
        VGCA VKC+N  + V+CNYS  GNV G  PY
Subjt:  VGCASVKCENNWSLVSCNYSPAGNVVGELPY

AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein9.7e-0654.84Show/hide
Query:  VGCASVKCENNWSLVSCNYSPAGNVVGELPY
        +GCA V+C N  + ++CNY P GN VGE PY
Subjt:  VGCASVKCENNWSLVSCNYSPAGNVVGELPY

AT4G33730.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein2.2e-0554.84Show/hide
Query:  VGCASVKCENNWSLVSCNYSPAGNVVGELPY
        +GC   KC N  S+V CNY PAGN +G  PY
Subjt:  VGCASVKCENNWSLVSCNYSPAGNVVGELPY

AT5G26130.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein2.2e-0558.06Show/hide
Query:  VGCASVKCENNWSLVSCNYSPAGNVVGELPY
        VGCA VKC+N  + V+CNY P GN  G  PY
Subjt:  VGCASVKCENNWSLVSCNYSPAGNVVGELPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAAATGGCACTCGCTAACATTCTCTCCGCCCTTTGCTTGATTGGGCTAACCTTAACCCCCATCACTGTTGCTCAAAGTGCCCCCAAAGACTTCGTCAATGCCCA
CAACGCACTTATGCTAAAAATTATATCGAGTCGAAGATTGCAACCTGCGAGATGGTGCACTCCAAAAAGTTTTTTAGTTGGTTGTGCCAGTGTCAAGTGTGAAAACAATT
GGTCCTTAGTGTCCTGCAACTATAGTCCTGCTGGTAATGTTGTAGGTGAACTTCCTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAAAATGGCACTCGCTAACATTCTCTCCGCCCTTTGCTTGATTGGGCTAACCTTAACCCCCATCACTGTTGCTCAAAGTGCCCCCAAAGACTTCGTCAATGCCCA
CAACGCACTTATGCTAAAAATTATATCGAGTCGAAGATTGCAACCTGCGAGATGGTGCACTCCAAAAAGTTTTTTAGTTGGTTGTGCCAGTGTCAAGTGTGAAAACAATT
GGTCCTTAGTGTCCTGCAACTATAGTCCTGCTGGTAATGTTGTAGGTGAACTTCCTTATTAG
Protein sequenceShow/hide protein sequence
MSKMALANILSALCLIGLTLTPITVAQSAPKDFVNAHNALMLKIISSRRLQPARWCTPKSFLVGCASVKCENNWSLVSCNYSPAGNVVGELPY