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Tan0005563 (gene) of Snake gourd v1 genome

Gene IDTan0005563
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG10:24950003..24951828
RNA-Seq ExpressionTan0005563
SyntenyTan0005563
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041127.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-3077.32Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL T K IMD LK +FGQP   L HEAIKYIY K MKEGTSVREHVLDMM+HFNI E+NGGVIDE N  QRFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANV

KAA0042331.1 gag/pol protein [Cucumis melo var. makuwa]5.8e-3170.91Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE
        M+DVLAKK+ESL TTK IMD LK MFGQP   LRHEAIKYIY K MKEGTS++EHVLDMM+HFNI EVNGG ID  NQ   FQ LTK KGKEVEANV   
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE

Query:  MPSARVGSSS
            + GSSS
Subjt:  MPSARVGSSS

KAA0047422.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-3071.82Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE
        M+DVLAKK+ESL T K IMD LK MFGQP   LRHEAIKYIY K MKEGTSVREHVLDMM+HFNI EVN G IDE N  QRFQ LTK K KEVEANV   
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE

Query:  MPSARVGSSS
            + GSSS
Subjt:  MPSARVGSSS

KAA0055183.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-2956.94Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQ----------------------
        M+D+LAKK+ESL T K IMD LK MFGQP   LRHE IKYIY KHMKEGTSVREHVLDMM+HFNI EVNGG IDE NQ                      
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQ----------------------

Query:  ------------LQRFQTLTKAKGKEVEANVDLEMPSARVGSSS
                    LQRFQ LTK KGKEVEANV       + GSSS
Subjt:  ------------LQRFQTLTKAKGKEVEANVDLEMPSARVGSSS

TYJ98401.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-3171.82Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE
        M+DVLAKK+ESL T K IMD LK MFGQP   LRHE IKYIY K MKEGTSVREHVL+MM+HFNI EVNGG IDE N  QRFQ LTK KGKEVEANV   
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE

Query:  MPSARVGSSS
            + GSSS
Subjt:  MPSARVGSSS

TrEMBL top hitse value%identityAlignment
A0A5A7THM4 Gag/pol protein8.1e-3177.32Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL T K IMD LK +FGQP   L HEAIKYIY K MKEGTSVREHVLDMM+HFNI E+NGGVIDE N  QRFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANV

A0A5D3BI96 Gag/pol protein1.6e-3171.82Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE
        M+DVLAKK+ESL T K IMD LK MFGQP   LRHE IKYIY K MKEGTSVREHVL+MM+HFNI EVNGG IDE N  QRFQ LTK KGKEVEANV   
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE

Query:  MPSARVGSSS
            + GSSS
Subjt:  MPSARVGSSS

A0A5D3BWP2 Gag/pol protein3.1e-3071.82Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE
        M+DVLAKK+ESL T K IMD LK MFGQP   LRHEAIKYIY K MKEGTSVREHVLDMM+HFNI EVN G IDE N  QRFQ LTK K KEVEANV   
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE

Query:  MPSARVGSSS
            + GSSS
Subjt:  MPSARVGSSS

A0A5D3CU35 Gag/pol protein2.8e-3170.91Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE
        M+DVLAKK+ESL TTK IMD LK MFGQP   LRHEAIKYIY K MKEGTS++EHVLDMM+HFNI EVNGG ID  NQ   FQ LTK KGKEVEANV   
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLE

Query:  MPSARVGSSS
            + GSSS
Subjt:  MPSARVGSSS

A0A5D3DQ34 Gag/pol protein5.3e-3056.94Show/hide
Query:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQ----------------------
        M+D+LAKK+ESL T K IMD LK MFGQP   LRHE IKYIY KHMKEGTSVREHVLDMM+HFNI EVNGG IDE NQ                      
Subjt:  MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQ----------------------

Query:  ------------LQRFQTLTKAKGKEVEANVDLEMPSARVGSSS
                    LQRFQ LTK KGKEVEANV       + GSSS
Subjt:  ------------LQRFQTLTKAKGKEVEANVDLEMPSARVGSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATGTATTGGCTAAGAAATACGAATCCTTGGGCACAACTAAGGCTATCATGGATTTGTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTTTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCATATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTCAATATTATTGAAGTAAATGGTGGTGTCATCG
ACGAGGAAAATCAGCTCCAACGTTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGCAAATGTTGATCTGGAGATGCCCAGCGCACGTGTTGGATCAAGTTCG
AGTATATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGATGTATTGGCTAAGAAATACGAATCCTTGGGCACAACTAAGGCTATCATGGATTTGTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTTTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCATATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTCAATATTATTGAAGTAAATGGTGGTGTCATCG
ACGAGGAAAATCAGCTCCAACGTTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGCAAATGTTGATCTGGAGATGCCCAGCGCACGTGTTGGATCAAGTTCG
AGTATATAG
Protein sequenceShow/hide protein sequence
MTDVLAKKYESLGTTKAIMDLLKEMFGQPSSVLRHEAIKYIYNKHMKEGTSVREHVLDMMVHFNIIEVNGGVIDEENQLQRFQTLTKAKGKEVEANVDLEMPSARVGSSS
SI