| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0047638.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa] | 8.9e-15 | 28.18 | Show/hide |
Query: SSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKISLLMKAVEERDLEIAYLKN------QMRI------------------
SSK R+V K+N L+D F +SK ++ D+MSVMMAD+ + M EMERKI+ LMK VEERD EI L+N M +
Subjt: SSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKISLLMKAVEERDLEIAYLKN------QMRI------------------
Query: -ARPLD----------------------------------------------------------------------------------------------
A LD
Subjt: -ARPLD----------------------------------------------------------------------------------------------
Query: -------------LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITK
LVQFG+FEPI+V E + P++ QEK K E++NEGW +VTRRKKR+ + +KES +R++ R + +QK K+K+ +
Subjt: -------------LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITK
Query: KPVYAIREDENLFRLRQLVTLEEFFPKNFL
KP +ED++ + ++LVTL +FFP FL
Subjt: KPVYAIREDENLFRLRQLVTLEEFFPKNFL
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| KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 2.6e-14 | 44.63 | Show/hide |
Query: KKKPHAREIGDNTYCRGIIRSRGVEIKEDRTPDA-IANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKIS
KK + N Y I RSR I +++ + +A I+K + S K +V+K+NPL+D + +SK ++ DVMSVMMAD+ + MAEMERKI+
Subjt: KKKPHAREIGDNTYCRGIIRSRGVEIKEDRTPDA-IANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKIS
Query: LLMKAVEERDLEIAYLKNQMR
LMKAVEERD EI L+ QMR
Subjt: LLMKAVEERDLEIAYLKNQMR
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| KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.6e-08 | 29.74 | Show/hide |
Query: IRSRGV------EIKEDRTPDAIANKIVKLIEGSSKDRVVVKDNPL-FDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKISLLMKAVEERDLE
I SRG ++++D+ A K+VK + K+ +VV PL F + + KD N ++ M+ + + + E K S V++ +
Subjt: IRSRGV------EIKEDRTPDAIANKIVKLIEGSSKDRVVVKDNPL-FDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKISLLMKAVEERDLE
Query: IAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQI
Y K I+ P++ ++ + +I+ + E E + + QEK + E+++EGWTVVTRRKKR+ + QKESRL+ +++R + +QK K+K+
Subjt: IAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQI
Query: TKKPVYAIREDENLFRLRQLVTLEEFFPKNFL
T+K +D++ R +++VTL +FFP FL
Subjt: TKKPVYAIREDENLFRLRQLVTLEEFFPKNFL
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| KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 9.8e-14 | 46.28 | Show/hide |
Query: KKKPHAREIGDNTYCRGIIRSRGVEIKEDRTP-DAIANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKIS
KK +TY I RSR I + + AIA I+K + S K +V+K+NPL++ + A +S ++ DVMSVMMADV + MAEMERKI+
Subjt: KKKPHAREIGDNTYCRGIIRSRGVEIKEDRTP-DAIANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKIS
Query: LLMKAVEERDLEIAYLKNQMR
LLMK V+ERD EIA LK QM+
Subjt: LLMKAVEERDLEIAYLKNQMR
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| TYK05006.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 2.3e-15 | 38.96 | Show/hide |
Query: KSIIEKKKPHAREIGDNTYCRGIIRSR--GVEIKEDRTPDAIANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAE
KS+ KK + ++ Y I RSR G+ I+E +A I+K + S K +V+K+NPL+D A +SK ++ DVMSVMMAD+ ++ MAE
Subjt: KSIIEKKKPHAREIGDNTYCRGIIRSR--GVEIKEDRTPDAIANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAE
Query: MERKISLLMKAVEERDLEIAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSM
MERKI+ LM VEERD EI L+ QM+ P++ S + ++V D+ +M
Subjt: MERKISLLMKAVEERDLEIAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSM
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| XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus] | 6.6e-10 | 42.74 | Show/hide |
Query: LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITKKPVYAIREDENLF
LVQFG+FEPI+V E S +P Q + + E+++EGW VVT RKKRQ Q+ESR +++++R + +QK K+K+ T K ED N
Subjt: LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITKKPVYAIREDENLF
Query: RLRQLVTLEEFFPKNFL
R ++LVTL +F PK+FL
Subjt: RLRQLVTLEEFFPKNFL
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| XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus] | 9.8e-14 | 46.28 | Show/hide |
Query: KKKPHAREIGDNTYCRGIIRSRGVEIKEDRTP-DAIANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKIS
KK +TY I RSR I + + AIA I+K + S K +V+K+NPL++ + A +S ++ DVMSVMMADV + MAEMERKI+
Subjt: KKKPHAREIGDNTYCRGIIRSRGVEIKEDRTP-DAIANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKIS
Query: LLMKAVEERDLEIAYLKNQMR
LLMK V+ERD EIA LK QM+
Subjt: LLMKAVEERDLEIAYLKNQMR
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| XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus] | 6.6e-10 | 42.74 | Show/hide |
Query: LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITKKPVYAIREDENLF
LVQFG+FEPI+V E S +P Q + + E+++EGW VVT RKKRQ Q+ESR +++++R + +QK K+K+ T K ED N
Subjt: LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITKKPVYAIREDENLF
Query: RLRQLVTLEEFFPKNFL
R ++LVTL +F PK+FL
Subjt: RLRQLVTLEEFFPKNFL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TPD2 Ty3-gypsy retrotransposon protein | 1.1e-13 | 43.1 | Show/hide |
Query: LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITKKPVYAIREDENLF
L+QFGS EP++++ + E Q Q +E+ KQ +D +EGWT+VTRRKKR+Q+++QKESR +R ++R SQ++K ++ +K + I E E L
Subjt: LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITKKPVYAIREDENLF
Query: RLRQLVTLEEFFPKNF
R RQ +TL++FF +NF
Subjt: RLRQLVTLEEFFPKNF
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| A0A5A7TRQ6 RNase H domain-containing protein | 1.8e-13 | 36.24 | Show/hide |
Query: MERKISLLMKAVEERDLEIAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRL
+++KI L + V + + +++ R++ L+QFGS EP++++ + E + Q Q +E+ KQ ++ EGWT+VTRRKKR+QS+ QKES
Subjt: MERKISLLMKAVEERDLEIAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRL
Query: FRHHKRKSMSQKKKRKQITKKPVYAIREDENLFRLRQLVTLEEFFPKNF
+R + K SQ++ ++ +K + I E E L R R+L+ L++FFPKNF
Subjt: FRHHKRKSMSQKKKRKQITKKPVYAIREDENLFRLRQLVTLEEFFPKNF
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| A0A5A7TXJ5 Retrotransposon protein putative ty3-gypsy sub-class | 4.3e-15 | 28.18 | Show/hide |
Query: SSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKISLLMKAVEERDLEIAYLKN------QMRI------------------
SSK R+V K+N L+D F +SK ++ D+MSVMMAD+ + M EMERKI+ LMK VEERD EI L+N M +
Subjt: SSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAEMERKISLLMKAVEERDLEIAYLKN------QMRI------------------
Query: -ARPLD----------------------------------------------------------------------------------------------
A LD
Subjt: -ARPLD----------------------------------------------------------------------------------------------
Query: -------------LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITK
LVQFG+FEPI+V E + P++ QEK K E++NEGW +VTRRKKR+ + +KES +R++ R + +QK K+K+ +
Subjt: -------------LVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRKSMSQKKKRKQITK
Query: KPVYAIREDENLFRLRQLVTLEEFFPKNFL
KP +ED++ + ++LVTL +FFP FL
Subjt: KPVYAIREDENLFRLRQLVTLEEFFPKNFL
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| A0A5D3C3J8 Ty3-gypsy retrotransposon protein | 1.1e-15 | 38.96 | Show/hide |
Query: KSIIEKKKPHAREIGDNTYCRGIIRSR--GVEIKEDRTPDAIANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAE
KS+ KK + ++ Y I RSR G+ I+E +A I+K + S K +V+K+NPL+D A +SK ++ DVMSVMMAD+ ++ MAE
Subjt: KSIIEKKKPHAREIGDNTYCRGIIRSR--GVEIKEDRTPDAIANKIVKLIEGSSKDRVVVKDNPLFDQFTPAIGQSKDASNQDVMSVMMADVESDERMAE
Query: MERKISLLMKAVEERDLEIAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSM
MERKI+ LM VEERD EI L+ QM+ P++ S + ++V D+ +M
Subjt: MERKISLLMKAVEERDLEIAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSM
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| A0A5D3D5V8 RNase H domain-containing protein | 1.8e-13 | 36.24 | Show/hide |
Query: MERKISLLMKAVEERDLEIAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRL
+++KI L + V + + +++ R++ L+QFGS EP++++ + E + Q Q +E+ KQ ++ EGWT+VTRRKKR+QS+ QKES
Subjt: MERKISLLMKAVEERDLEIAYLKNQMRIARPLDLVQFGSFEPIIVWMNDEPSSMNPQEGGIQKQYVQEKNKQTEDENEGWTVVTRRKKRQQSYAQKESRL
Query: FRHHKRKSMSQKKKRKQITKKPVYAIREDENLFRLRQLVTLEEFFPKNF
+R + K SQ++ ++ +K + I E E L R R+L+ L++FFPKNF
Subjt: FRHHKRKSMSQKKKRKQITKKPVYAIREDENLFRLRQLVTLEEFFPKNF
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