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Tan0005587 (gene) of Snake gourd v1 genome

Gene IDTan0005587
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG06:43040534..43040794
RNA-Seq ExpressionTan0005587
SyntenyTan0005587
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-2172.6Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGAVIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-2172.6Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGAVIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-2172.6Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGAVIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

XP_038876370.1 uncharacterized protein LOC120068812, partial [Benincasa hispida]3.8e-2276.71Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        MVTAKEIM SLQA+FGQPSSS  +DA+K+VYN RMKEG +VREHVLDMMVHFN+ EVN AV++EKSQV FIM+
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

XP_038880476.1 uncharacterized protein LOC120072136 [Benincasa hispida]2.9e-2276.71Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        MV AKEIM SLQA+FGQPSSS  +DA+KYVYN RMKEGT+VREHVLDMMVHFN+ EVNGAV++EK+Q  FIM+
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.0e-2172.6Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGAVIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

A0A5A7TU93 Gag/pol protein2.0e-2172.6Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGAVIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

A0A5A7TWB9 Gag/pol protein2.0e-2172.6Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGAVIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

A0A5A7V4M1 Gag/pol protein2.0e-2172.6Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGAVIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

A0A5D3CPJ6 Gag/pol protein2.0e-2172.6Show/hide
Query:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGAVIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCACCGCGAAGGAGATCATGGGATCGTTGCAAGCGATGTTCGGACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTCCCGTATGAAGGA
GGGAACCTCTGTTAGGGAACATGTCCTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGCTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATC
TCTTCCGAAGAGTTTCCTCCCATTCCGCACCAATGCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCACCGCGAAGGAGATCATGGGATCGTTGCAAGCGATGTTCGGACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTCCCGTATGAAGGA
GGGAACCTCTGTTAGGGAACATGTCCTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGCTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATC
TCTTCCGAAGAGTTTCCTCCCATTCCGCACCAATGCGGTGA
Protein sequenceShow/hide protein sequence
MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMDLFRRVSSHSAPMR