CuGenDBv2

Gene ID	Tan0005619
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S15, chloroplastic
Genome location	Contig00124:53761..54033
RNA-Seq Expression	Tan0005619
Synteny	Tan0005619
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR005290 - Ribosomal protein S15, bacterial-type IPR009068 - S15/NS1, RNA-binding

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

YP_004841842.1 ribosomal protein S15 [Cucumis melo subsp. melo]

1.4e-35

95.56

Show/hide

Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK NGGSVEFQVV+FTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

YP_009525242.1 ribosomal protein S15 [Hodgsonia macrocarpa]

8.2e-36

95.56

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK+NGGSVEFQVVNFTNKIRRLTSH ELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

YP_009560892.1 ribosomal protein S15 [Trichosanthes kirilowii]

3.7e-36

96.67

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK NGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

YP_009751700.1 ribosomal protein S15 [Hodgsonia heteroclita]

2.8e-36

96.67

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK+NGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

YP_009752205.1 ribosomal protein S15 [Linnaeosicyos amara]

1.4e-35

95.56

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK NGGSVEFQV NFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

TrEMBL top hits

e value

%identity

Alignment

A0A410HFE2 30S ribosomal protein S15, chloroplastic

1.8e-36

96.67

Show/hide

Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK NGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

A0A6H0EQQ3 30S ribosomal protein S15, chloroplastic

1.8e-36

96.67

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK NGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

A0A6H0ER68 30S ribosomal protein S15, chloroplastic

1.4e-36

96.67

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK+NGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

A0A6H0ET41 30S ribosomal protein S15, chloroplastic

1.8e-36

96.67

Show/hide

Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK NGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

A0A6M3RUA6 30S ribosomal protein S15, chloroplastic

1.8e-36

96.67

Show/hide

Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK NGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

SwissProt top hits

e value

%identity

Alignment

A4GYX3 30S ribosomal protein S15, chloroplastic

2.6e-32

82.22

Show/hide

Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVK+SF S+ISQE+KK N GSVEFQ+V+FTNKIRRLTSHLELH+KDYLSQRGLRKILGKRQRLLSYL KK  +RYKELI+QL+IRESKT+
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

B1NWK6 30S ribosomal protein S15, chloroplastic

8.8e-33

83.33

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSF SVISQEEK  N GSVEFQ+V+FTNKIRRLTSH ELH+KDYLSQRGLRKILGKRQRLLSYL KK ++RYKELI++LDIRESKT+
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

Q09FY9 30S ribosomal protein S15, chloroplastic

3.3e-32

84.09

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESK
        MVKN+F SVISQEEK+ N GS EFQV NFTNKIRRLTSHLELH+KDYLSQRGLRKILGKRQRLL+YL KK K+RYKELI+QLDIRE K
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESK

Q14FA1 30S ribosomal protein S15, chloroplastic

2.6e-32

82.22

Show/hide

Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVK+SF S+ISQE+KK N GSVEFQ+V+FTNKIRRLTSHLELH+KDYLSQRGLRKILGKRQRLLSYL KK  +RYKELI+QL+IRESKT+
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

Q4VZL1 30S ribosomal protein S15, chloroplastic

1.8e-38

95.56

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        MVKNSFSSVISQEEKK NGGSVEFQVV+FTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYL KK KMRYKELINQLDIRESKTQ
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G15810.1 S15/NS1, RNA-binding protein

3.9e-04

37.5

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Query:  KSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRES
        +S+ GS   QV   T KI+ L+S   LHKKD  S++GL  ++ KR++LL YL +     Y  ++++L +R++
Subjt:  KSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRES

ATCG01120.1 chloroplast ribosomal protein S15

6.7e-28

73.33

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Query:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ
        M+KN   S   +E+K+ + GSVEFQV +FTNKIRRLTSHLELH+KDYLSQRGLRKILGKRQRLL+YL KK ++RYKELINQL+IRE KT+
Subjt:  MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

Sequences

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CDS sequence

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ATGGTAAAAAATTCATTCAGCTCAGTTATTTCGCAAGAAGAAAAAAAATCAAATGGAGGATCTGTTGAATTTCAAGTAGTCAATTTCACCAATAAGATACGAAGACTTAC
TTCACATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAGAGGTCTACGTAAAATTCTCGGAAAACGCCAACGATTACTTTCTTATTTAGAAAAGAAAAAGAAAATGC
GTTATAAAGAATTAATTAATCAATTGGATATTCGGGAGTCAAAAACTCAGTAA

mRNA sequence

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Protein sequence

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MVKNSFSSVISQEEKKSNGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLEKKKKMRYKELINQLDIRESKTQ

Tan0005619 (gene) of Snake gourd v1 genome