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Tan0005636 (gene) of Snake gourd v1 genome

Gene IDTan0005636
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:14113434..14115952
RNA-Seq ExpressionTan0005636
SyntenyTan0005636
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]5.1e-1051Show/hide
Query:  LPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVGRAPLRQRRWHKRWLYWACPTKRGFFIAHSFNALKTFQVEIELLVPDILPLSAESSTS
        +PRG+R S++T+         T +  LSTLSVL DN  VVS G+APLRQRRW  R      PT         F    TF VEIEL VPDILP SAESS S
Subjt:  LPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVGRAPLRQRRWHKRWLYWACPTKRGFFIAHSFNALKTFQVEIELLVPDILPLSAESSTS

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.1e-1249.18Show/hide
Query:  KSEKSLIFGLPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVG------------RAPLRQRRWHKRWLYWACPT-KRGFFIAHSFNALKT
        KS + L    PRG+RSS++T       R       LSTLSVLRDN  VVS G            RAPL  RR  KRWLYWACPT +R   +  +F+ L  
Subjt:  KSEKSLIFGLPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVG------------RAPLRQRRWHKRWLYWACPT-KRGFFIAHSFNALKT

Query:  FQVEIELLVPDILPLSAESSTS
          VEIEL VPD LP SAESS S
Subjt:  FQVEIELLVPDILPLSAESSTS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.1e-1249.18Show/hide
Query:  KSEKSLIFGLPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVG------------RAPLRQRRWHKRWLYWACPT-KRGFFIAHSFNALKT
        KS + L    PRG+RSS++T       R       LSTLSVLRDN  VVS G            RAPL  RR  KRWLYWACPT +R   +  +F+ L  
Subjt:  KSEKSLIFGLPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVG------------RAPLRQRRWHKRWLYWACPT-KRGFFIAHSFNALKT

Query:  FQVEIELLVPDILPLSAESSTS
          VEIEL VPD LP SAESS S
Subjt:  FQVEIELLVPDILPLSAESSTS

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]1.0e-0555.93Show/hide
Query:  YRVHTGLILLSTLSVLRDNIVVVSVGRAPL-----------RQRRWHKRWLYWACPTKR
        YRVHT  I L TLSVLRDN V++SV R PL             RR  KRWLYWAC T+R
Subjt:  YRVHTGLILLSTLSVLRDNIVVVSVGRAPL-----------RQRRWHKRWLYWACPTKR

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.1e-1051Show/hide
Query:  LPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVGRAPLRQRRWHKRWLYWACPTKRGFFIAHSFNALKTFQVEIELLVPDILPLSAESSTS
        +PRG+R S++T+         T +  LSTLSVL DN  VVS G+APLRQRRW  R      PT         F    TF VEIEL VPDILP SAESS S
Subjt:  LPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVGRAPLRQRRWHKRWLYWACPTKRGFFIAHSFNALKTFQVEIELLVPDILPLSAESSTS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.5e-1051Show/hide
Query:  LPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVGRAPLRQRRWHKRWLYWACPTKRGFFIAHSFNALKTFQVEIELLVPDILPLSAESSTS
        +PRG+R S++T+         T +  LSTLSVL DN  VVS G+APLRQRRW  R      PT         F    TF VEIEL VPDILP SAESS S
Subjt:  LPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVGRAPLRQRRWHKRWLYWACPTKRGFFIAHSFNALKTFQVEIELLVPDILPLSAESSTS

A0A5A7VGQ5 Uncharacterized protein5.4e-1349.18Show/hide
Query:  KSEKSLIFGLPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVG------------RAPLRQRRWHKRWLYWACPT-KRGFFIAHSFNALKT
        KS + L    PRG+RSS++T       R       LSTLSVLRDN  VVS G            RAPL  RR  KRWLYWACPT +R   +  +F+ L  
Subjt:  KSEKSLIFGLPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVG------------RAPLRQRRWHKRWLYWACPT-KRGFFIAHSFNALKT

Query:  FQVEIELLVPDILPLSAESSTS
          VEIEL VPD LP SAESS S
Subjt:  FQVEIELLVPDILPLSAESSTS

A0A5D3BG85 Uncharacterized protein5.4e-1349.18Show/hide
Query:  KSEKSLIFGLPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVG------------RAPLRQRRWHKRWLYWACPT-KRGFFIAHSFNALKT
        KS + L    PRG+RSS++T       R       LSTLSVLRDN  VVS G            RAPL  RR  KRWLYWACPT +R   +  +F+ L  
Subjt:  KSEKSLIFGLPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVG------------RAPLRQRRWHKRWLYWACPT-KRGFFIAHSFNALKT

Query:  FQVEIELLVPDILPLSAESSTS
          VEIEL VPD LP SAESS S
Subjt:  FQVEIELLVPDILPLSAESSTS

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein4.9e-0655.93Show/hide
Query:  YRVHTGLILLSTLSVLRDNIVVVSVGRAPL-----------RQRRWHKRWLYWACPTKR
        YRVHT  I L TLSVLRDN V++SV R PL             RR  KRWLYWAC T+R
Subjt:  YRVHTGLILLSTLSVLRDNIVVVSVGRAPL-----------RQRRWHKRWLYWACPTKR

A0A5D3BTP3 Reverse transcriptase2.5e-1051Show/hide
Query:  LPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVGRAPLRQRRWHKRWLYWACPTKRGFFIAHSFNALKTFQVEIELLVPDILPLSAESSTS
        +PRG+R S++T+         T +  LSTLSVL DN  VVS G+APLRQRRW  R      PT         F    TF VEIEL VPDILP SAESS S
Subjt:  LPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVGRAPLRQRRWHKRWLYWACPTKRGFFIAHSFNALKTFQVEIELLVPDILPLSAESSTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTTCAAAAACACTTTTCGAAGGAACGTTGTTCAAAATGTAAACCGCAGCAGAAGACAGAATTTGCTGTCAAATCCGAGAAGTCTCTGATTTTTGGGTTGCCAAG
AGGAGATAGGTCGAGTGTACGGACCAAGCCTGAGGCTTTATGGTACCGTGTGCACACAGGTCTTATTCTGTTGTCCACGTTGAGTGTACTCCGTGACAACATTGTTGTCG
TGAGTGTTGGGCGGGCTCCACTACGACAAAGACGATGGCATAAACGTTGGTTGTACTGGGCGTGCCCTACAAAACGTGGATTCTTCATAGCTCATTCTTTCAATGCTCTT
AAAACCTTTCAGGTAGAGATCGAGCTCCTGGTACCTGACATCCTGCCATTATCTGCTGAAAGCTCCACGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTTCAAAAACACTTTTCGAAGGAACGTTGTTCAAAATGTAAACCGCAGCAGAAGACAGAATTTGCTGTCAAATCCGAGAAGTCTCTGATTTTTGGGTTGCCAAG
AGGAGATAGGTCGAGTGTACGGACCAAGCCTGAGGCTTTATGGTACCGTGTGCACACAGGTCTTATTCTGTTGTCCACGTTGAGTGTACTCCGTGACAACATTGTTGTCG
TGAGTGTTGGGCGGGCTCCACTACGACAAAGACGATGGCATAAACGTTGGTTGTACTGGGCGTGCCCTACAAAACGTGGATTCTTCATAGCTCATTCTTTCAATGCTCTT
AAAACCTTTCAGGTAGAGATCGAGCTCCTGGTACCTGACATCCTGCCATTATCTGCTGAAAGCTCCACGAGTTGA
Protein sequenceShow/hide protein sequence
MVFQKHFSKERCSKCKPQQKTEFAVKSEKSLIFGLPRGDRSSVRTKPEALWYRVHTGLILLSTLSVLRDNIVVVSVGRAPLRQRRWHKRWLYWACPTKRGFFIAHSFNAL
KTFQVEIELLVPDILPLSAESSTS