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Tan0005644 (gene) of Snake gourd v1 genome

Gene IDTan0005644
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG10:41332837..41336394
RNA-Seq ExpressionTan0005644
SyntenyTan0005644
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048153.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-1857.94Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL
        DV+   + LHVP+G IT+ KAKKIQEAFTLH+QKL            K LYNVS+ SQ+E+GVKM REKL +L+D T ++KR       S+FDLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL

Query:  TKLLVGI
        TKLLVGI
Subjt:  TKLLVGI

KAA0051908.1 putative gag protein [Cucumis melo var. makuwa]1.4e-1475.81Show/hide
Query:  EKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQKRNLGGRG
        E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   +R LGGRG
Subjt:  EKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQKRNLGGRG

KAA0063387.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.1e-1959.43Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL
        DV+   + LHVPEG IT+ KAKKIQEAFT+H+QKL            K LYNVS+ SQ+E+GVKMAREKL +L+DDT+++KR       S+FDLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL

Query:  TKLLVG
        TKLLVG
Subjt:  TKLLVG

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.1e-1959.81Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL            K LYNVS+ SQ+E+GVKMAREKL +L+D T ++KR       S+FDLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL

Query:  TKLLVGI
        TKLLVGI
Subjt:  TKLLVGI

TYK21797.1 uncharacterized protein E5676_scaffold991G00010 [Cucumis melo var. makuwa]3.6e-1575.81Show/hide
Query:  EKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQKRNLGGRG
        E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R+ QEDEGMFDL   +R LGGRG
Subjt:  EKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQKRNLGGRG

TrEMBL top hitse value%identityAlignment
A0A5A7TX19 Reverse transcriptase2.2e-1857.94Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL
        DV+   + LHVP+G IT+ KAKKIQEAFTLH+QKL            K LYNVS+ SQ+E+GVKM REKL +L+D T ++KR       S+FDLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL

Query:  TKLLVGI
        TKLLVGI
Subjt:  TKLLVGI

A0A5A7V8R2 Transposon Ty3-I Gag-Pol polyprotein5.3e-2059.43Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL
        DV+   + LHVPEG IT+ KAKKIQEAFT+H+QKL            K LYNVS+ SQ+E+GVKMAREKL +L+DDT+++KR       S+FDLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL

Query:  TKLLVG
        TKLLVG
Subjt:  TKLLVG

A0A5A7VII0 Uncharacterized protein6.7e-1575.81Show/hide
Query:  EKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQKRNLGGRG
        E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   +R LGGRG
Subjt:  EKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQKRNLGGRG

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein2.0e-1959.81Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL            K LYNVS+ SQ+E+GVKMAREKL +L+D T ++KR       S+FDLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLP-----------KILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLL

Query:  TKLLVGI
        TKLLVGI
Subjt:  TKLLVGI

A0A5D3DDM5 Uncharacterized protein1.8e-1575.81Show/hide
Query:  EKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQKRNLGGRG
        E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R+ QEDEGMFDL   +R LGGRG
Subjt:  EKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQKRNLGGRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGATATGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCA
AAAGCTCCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGAGAAAAGTTGTCTAGTTTGAAGGATGACACGAAGGACAAAA
AAAGATCTAGGAATGACCATCCTTATTCTAGGTTTGATCTAAGAGTTATTCATCTTCTAACTAAACTCTTGGTTGGAATCAATTTCTCGTTGGTCGACATCCTTTGGTCG
TGTGGAGAGGTCCTTATAAAAAAAATATCACAAGATAATAAAGAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGAT
GATGAGGGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAAAAAGAAACTTAGGAG
GAAGAGGAATAAAATACACAAGGTTGAGTTTGTTTTTAATGAGTAAGGGGAACCAACATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGATATGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCA
AAAGCTCCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGAGAAAAGTTGTCTAGTTTGAAGGATGACACGAAGGACAAAA
AAAGATCTAGGAATGACCATCCTTATTCTAGGTTTGATCTAAGAGTTATTCATCTTCTAACTAAACTCTTGGTTGGAATCAATTTCTCGTTGGTCGACATCCTTTGGTCG
TGTGGAGAGGTCCTTATAAAAAAAATATCACAAGATAATAAAGAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGAT
GATGAGGGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAAAAAGAAACTTAGGAG
GAAGAGGAATAAAATACACAAGGTTGAGTTTGTTTTTAATGAGTAAGGGGAACCAACATAAATGA
Protein sequenceShow/hide protein sequence
MERYDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLPKILYNVSTTSQDENGVKMAREKLSSLKDDTKDKKRSRNDHPYSRFDLRVIHLLTKLLVGINFSLVDILWS
CGEVLIKKISQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQKRNLGGRGIKYTRLSLFLMSKGNQHK