CuGenDBv2

Gene ID	Tan0005698
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	LG05:58017645..58018541
RNA-Seq Expression	Tan0005698
Synteny	Tan0005698
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025749.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.8e-27

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE
        FV++ + EAESSN+KKNEASKE KEKS+S+QCWKCKGFGH+SK+CVNK+VMVIRNG++DS+DEC+EHDAP EEES+  DDEY+E
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE

TYK06180.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.6e-26

73.81

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE
        FV++ + EAESSN+KKNEASKE KEKS+S+QCWKCKGFGH+SK+CVNK+VMVIRNG++DS+DE +EHDAP EEES+  DDEY+E
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE

TYK09767.1 uncharacterized protein E5676_scaffold127G00510 [Cucumis melo var. makuwa]

8.4e-25

74.42

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        FV++ K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.4e-24

74.42

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        FV + K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

1.4e-24

74.42

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        FV + K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKE7 Transposon Ty3-I Gag-Pol polyprotein

8.7e-28

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE
        FV++ + EAESSN+KKNEASKE KEKS+S+QCWKCKGFGH+SK+CVNK+VMVIRNG++DS+DEC+EHDAP EEES+  DDEY+E
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

6.9e-25

74.42

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        FV + K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

A0A5D3C4C3 Transposon Ty3-I Gag-Pol polyprotein

1.3e-26

73.81

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE
        FV++ + EAESSN+KKNEASKE KEKS+S+QCWKCKGFGH+SK+CVNK+VMVIRNG++DS+DE +EHDAP EEES+  DDEY+E
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE

A0A5D3C8C6 CCHC-type domain-containing protein

6.9e-25

74.42

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        FV + K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

A0A5D3CCP8 CCHC-type domain-containing protein

4.1e-25

74.42

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Query:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        FV++ K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTGTTCTTTCGCTAAAAGAGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAAGGAAAAGTCTAGTTCTATTCAATGTTGGAAGTGCAA
AGGGTTTGGACACGTGAGCAAAGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATGATGCCCCATTTGAGG
AAGAATCTGAAATATGTGATGATGAGTATGTTGAAGAAGAAAGAATGTGA

mRNA sequence

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Protein sequence

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MFVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVEEERM

Tan0005698 (gene) of Snake gourd v1 genome