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Tan0005727 (gene) of Snake gourd v1 genome

Gene IDTan0005727
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG02:42283043..42283324
RNA-Seq ExpressionTan0005727
SyntenyTan0005727
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4359769.1 hypothetical protein F8388_008331 [Cannabis sativa]4.8e-0740.91Show/hide
Query:  RRGEKEVIRSNRP-LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN
        +RG      S+R  L W PP  G LKLNTDA +SS  N TG GA++RD  GK+IAA +    G+++  AAE + +++ ++  ++ G N
Subjt:  RRGEKEVIRSNRP-LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN

KAF4362586.1 hypothetical protein F8388_011413 [Cannabis sativa]4.8e-0737.93Show/hide
Query:  RRGEKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN
        RR + +       L W PP  G LKLNTDA +S+  N TG GA++RD  GK++AA +    G+M    AE + +++G++ +++ G N
Subjt:  RRGEKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN

XP_030509082.1 uncharacterized protein LOC115723746 [Cannabis sativa]3.7e-0741.89Show/hide
Query:  LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN
        L W PP  G LKLNTDA +S+  N TG G ++RD  GK++AA +    G+M    AE + +++G++ +++ GFN
Subjt:  LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN

XP_031107819.1 uncharacterized protein LOC116012428 [Ipomoea triloba]2.8e-0736.25Show/hide
Query:  SNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFNRL
        S   ++W  P NG +KLNTDA++  A+NV G G ++RD +G+ +A+K+E++ G   +  AEA  + + +   K+ G  R+
Subjt:  SNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFNRL

XP_031131899.1 uncharacterized protein LOC116033287 [Ipomoea triloba]1.0e-0943.01Show/hide
Query:  RRWRR----GEKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGF
        R W++     +  ++ SN   QW PP++G LKLNT+  L  +S+V GLG II+D  G+ IAAKSE++ G  NV  AEA +I + +   K LG+
Subjt:  RRWRR----GEKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGF

TrEMBL top hitse value%identityAlignment
A0A7J6EPY6 Uncharacterized protein2.3e-0740.91Show/hide
Query:  RRGEKEVIRSNRP-LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN
        +RG      S+R  L W PP  G LKLNTDA +SS  N TG GA++RD  GK+IAA +    G+++  AAE + +++ ++  ++ G N
Subjt:  RRGEKEVIRSNRP-LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN

A0A7J6GE83 RNase H domain-containing protein2.3e-0739.29Show/hide
Query:  EKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN
        + + I  +  L+W PP  G LKLN D  +SS  N TG GAI+RDS G++IAA++ +   +M    AE + +++G++ + E G N
Subjt:  EKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN

A0A803NTC1 Uncharacterized protein2.3e-0744.59Show/hide
Query:  LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN
        L W PP+ G LKLN DA +SS  N TG G I+RD  GK+IAA + +  G+M   AAE + + +G++ +++ G N
Subjt:  LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN

A0A803Q0L9 Uncharacterized protein8.0e-0840.48Show/hide
Query:  EKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN
        + + I  +  L W PP  G LKL  DA +SS  N  G GAI+RDS G++IAA++ +  G+M   AAE + +++G++ + E G N
Subjt:  EKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN

A0A803Q1A0 Uncharacterized protein3.6e-0840.91Show/hide
Query:  RRGEKEVIRSNRPLQ-WIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN
        +RG++  + S+R LQ W PP  G LKLNTDA +SS  N TG GA++RD  GK++AA +    G+++  AAE + +++ ++   + G N
Subjt:  RRGEKEVIRSNRPLQ-WIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0532.91Show/hide
Query:  NRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFNRL
        +R  +W PP    LK N DA+    + V+GLG I+R+S+G +I       +G+M    AE  T+I  I+ +   G  ++
Subjt:  NRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFNRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGATGGAGAAGAGGGGAGAAGGAAGTGATACGATCTAATCGACCATTACAGTGGATCCCTCCAGTCAATGGTTGCCTGAAACTCAACACAGATGCAACACTTTC
ATCCGCTTCCAATGTCACTGGGTTGGGGGCAATAATAAGGGATTCTGAAGGGAAGATGATAGCGGCAAAGTCTGAAACAGTGAAGGGAAAAATGAATGTATTAGCTGCGG
AGGCCTTTACGATAATCAAAGGGATAGAAATGGCGAAAGAGTTAGGGTTTAATCGGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGATGGAGAAGAGGGGAGAAGGAAGTGATACGATCTAATCGACCATTACAGTGGATCCCTCCAGTCAATGGTTGCCTGAAACTCAACACAGATGCAACACTTTC
ATCCGCTTCCAATGTCACTGGGTTGGGGGCAATAATAAGGGATTCTGAAGGGAAGATGATAGCGGCAAAGTCTGAAACAGTGAAGGGAAAAATGAATGTATTAGCTGCGG
AGGCCTTTACGATAATCAAAGGGATAGAAATGGCGAAAGAGTTAGGGTTTAATCGGTTGTAG
Protein sequenceShow/hide protein sequence
MRRWRRGEKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFNRL