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Tan0005750 (gene) of Snake gourd v1 genome

Gene IDTan0005750
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSUPPRESSOR OF ABI3-5
Genome locationLG10:64906362..64908501
RNA-Seq ExpressionTan0005750
SyntenyTan0005750
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046226.1 RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa]1.0e-1885.25Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
XP_016902976.1 PREDICTED: SUPPRESSOR OF ABI3-5 [Cucumis melo]7.8e-1983.87Show/hide
Query:  MQCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        +QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  MQCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
XP_022956313.1 SUPPRESSOR OF ABI3-5 isoform X1 [Cucurbita moschata]1.0e-1885.25Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
XP_023527146.1 SUPPRESSOR OF ABI3-5 isoform X2 [Cucurbita pepo subsp. pepo]1.0e-1885.25Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
XP_038876047.1 LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 [Benincasa hispida]1.0e-1885.25Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
TrEMBL top hitse value%identityAlignment
A0A0A0KR81 Uncharacterized protein4.9e-1985.25Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
A0A1S4E414 SUPPRESSOR OF ABI3-53.8e-1983.87Show/hide
Query:  MQCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        +QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  MQCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
A0A5D3D622 RNA-binding protein 5-B isoform X24.9e-1985.25Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
A0A6J1GW06 SUPPRESSOR OF ABI3-5 isoform X14.9e-1985.25Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
A0A6J1JQL0 SUPPRESSOR OF ABI3-5 isoform X24.9e-1985.25Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+TDDAPPADINMSNQS LGKKGQE      LVVRGLDENA+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
SwissProt top hitse value%identityAlignment
F4JCU0 SUPPRESSOR OF ABI3-53.9e-1365.57Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+T D+P AD+ +SN S  GK+  E      LVVRGLDE+A+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
Arabidopsis top hitse value%identityAlignment
AT3G54230.1 suppressor of abi3-52.8e-1465.57Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+T D+P AD+ +SN S  GK+  E      LVVRGLDE+A+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
AT3G54230.2 suppressor of abi3-52.8e-1465.57Show/hide
Query:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK
        QCNEP+T D+P AD+ +SN S  GK+  E      LVVRGLDE+A+EEMLRYEFSKHAPIK
Subjt:  QCNEPQTDDAPPADINMSNQSFLGKKGQEV-QLMCLVVRGLDENANEEMLRYEFSKHAPIK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTGTAATGAACCTCAGACTGATGATGCTCCACCGGCAGATATTAATATGTCTAATCAATCGTTTTTAGGAAAGAAAGGACAAGAGGTCCAACTCATGTGTTTGGT
TGTTCGCGGATTGGATGAAAATGCAAATGAGGAAATGCTTCGCTATGAGTTCTCTAAACATGCTCCTATTAAGATTGTTCATAATCCAGATGCACCTCTTAAAACTCTCT
TCAATACTAAGCAGACTTTTGCACAAGCACAAATAGACGAGTTACAAGTTGAATGGGCAGATTATGTTTCAAATTTCATCGGTTGA
mRNA sequenceShow/hide mRNA sequence
CTTTCAAGTAAGCCTTGGTTTGTGAGTTTAAAGGAGCTTTAATTTCAAGAATTCTTGGAATGCCATCTCTTTAGATTTTCCCATATCTTTTCTAATTCTGAGAAGTGCAT
GGGTTGTGTACTTGGTAGCTTCATGTACATATATAGCTCATTTTATTTAAGTTATGAAGCATTATAATCTAAACTGTAAATAATAATTCAAAATCTCCCCAATTGGAATA
AGAAAAGTCAGTAACTATAATTATAAAAGAATGGACAAAAACCCCTATGAGGATGCAAAATGCCTCATTATTGCAATTCTTTCATTTCATTCATTATTCTTAGGCTTTGA
CTGTGTTGATTCTGGAGTGTTTTGACTTTGTATGTGGATTACTTGGTATATCGGTAGTTGTATGATACACGTTGGCCAAGATGTTCATTGTGTATTGTTGGACTTTATTA
ATTTACATATATGAAGTATAGGTTAATCTTTTCTGGGAGTCAATGTTAAGGGTTCTTGTTGTCAATATAGAGTTAAATAATAATAAATAAGTTTTTGGTAGTTCATACCT
TATTTATGTTTCGTGGTTTTTTGTTTTCTTGTTTCTGATTCTGTTTAATTTGTCCCTTTGATTGTCTGATAGTGATAAGAATAACAATCTTTTTCATGTAGTTGGTGTAA
GTTAAAGGTTGTGTATATCGCAGTTGTGAGATAGATATTTATGTATGTCAAGTGTTGGACTACAATTAGAAGCTTTAAATCTCTAATTATGGGGAAAATGGCATCTTATT
CATTAAAAGACATATATGTGGTTAATATTGAAAAAACCATCATTGATTTATGCAGTGTAATGAACCTCAGACTGATGATGCTCCACCGGCAGATATTAATATGTCTAATC
AATCGTTTTTAGGAAAGAAAGGACAAGAGGTCCAACTCATGTGTTTGGTTGTTCGCGGATTGGATGAAAATGCAAATGAGGAAATGCTTCGCTATGAGTTCTCTAAACAT
GCTCCTATTAAGATTGTTCATAATCCAGATGCACCTCTTAAAACTCTCTTCAATACTAAGCAGACTTTTGCACAAGCACAAATAGACGAGTTACAAGTTGAATGGGCAGA
TTATGTTTCAAATTTCATCGGTTGAGTGTTGTATATATGTGTTTATTGCTTATTACATGTGAACAATTTTAGAACTTTTGATAGTTTTATAGACATTTTTTGTAAATCAA
GAATTTTGTTTTGTCGATTACGACAATTCTTCAGCTAAAGAAATCTGTTAGAGGGGAGTTTTGTAATATTTAGTCATGAGCTGTGAAATATATAATAGATTTGGTTTATG
TGAAAATAGATATGTGTCTTGCTTTCGATTGAATTAAATGAAATACAATAGTTTGTTTTTCGTATGTTTATTTGATTTATGTTTTTGTTTTTTATTGAATGGAATTAATA
ATTGTGCTTGAGAGTTGAGAATTATTAGAAAGCATTGCTATAGAAATTTTTTTGCAGGTTTCGGGTTTTGATTATATACAAATAAATATATTTTTGGTGGTATAAGAATC
AATGTCAGTTTAAACCTGACATGGTATATTCCAATAATGACG
Protein sequenceShow/hide protein sequence
MQCNEPQTDDAPPADINMSNQSFLGKKGQEVQLMCLVVRGLDENANEEMLRYEFSKHAPIKIVHNPDAPLKTLFNTKQTFAQAQIDELQVEWADYVSNFIG