CuGenDBv2

Gene ID	Tan0005791
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase I subunit rpa49-like
Genome location	LG06:1428488..1434249
RNA-Seq Expression	Tan0005791
Synteny	Tan0005791
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7025877.1 DNA-directed RNA polymerase I subunit rpa49 [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-219

89.75

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MA  SK F  EETHYAEPEANSQ PAKK KKSEKKKKRVPPVN KI++LSNHP+K PPLVGYFPSG+DP+KD  EE VEEQNS+RA+VYRHK KPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKA+QSLKIVPIASNMIFRLDPKVRGSDV E ESPSVANDELSVQ KADRMREL+NLYGTKKSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKL SLKQEDDPETKKDLDGKMKNVVVNKEAL+ ++AQI+RNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFL+QAESEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKK+CCI+SYITHL+KYKDQHSMDGVSS KGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVL LFADEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVT+P+PLQFPE+R+KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

XP_022151610.1 DNA-directed RNA polymerase I subunit rpa49 [Momordica charantia]

5.6e-215

87.7

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MA  +KSFELEETHYAEPEANSQSPAKK +KSEKKKKRV  VNA I++LSNHP+KTPPLVGYFPSGF+PHKD  EEAV+EQ SIRARVYR+KNKPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKA+QSLKIVPIA+NMIFRLDPKVRGSDVSEKESP+V +DELSVQ KADRMRELTNLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKLHSLKQ DD +T+KDLD KMKNVVVNKEAL+GT+A+IARNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y L++AE+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKK+CCIFSYITHLIK+KDQ+SMDGVSSAKGHKIPSMLRQKFSSMFS  ESRRLS EK+DLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
        TLRLHFDNLGCKFIRKNNLSLVT+P+PL+FP++  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

XP_022964095.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita moschata]

4.0e-221

89.98

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MA  SK F  EETHYAEPEANSQSPAKK+KKSEKKKKRVPPVN KI++LSNHP+K PPLVGYFPSG+DP+KD  EE VEEQNS+RA+VYRHK KPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKA+QSLKIVPIASNMIFRLDPKVRGSDV E ESPSVANDELSVQ KADRMREL+NLYGTKKSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKL SLKQEDDPETKKDLDGKMKNVVVNKEAL+ ++AQI+RNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFL+QAESEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS KGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVT+P+PLQFPE+R+KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

XP_023000003.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

2.4e-218

89.52

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MA  SK F  EETHYA PEANSQSP KK KKSEKKKKRVPPVN KI++LSNHP+K PPLVGYFPSG+DP+KD  EEAVEEQNS+RA+VYRHK KPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        +VSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKA+QSLKIVPIASNMIFRLDPKV GSDV E ESPSVANDELSVQ KADRMREL+NLYGTKKSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKL SLKQEDDPETKKDLDGKMKNVVVNKEAL+ ++AQI+RNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFL+QAESEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS +GHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
        TLR+H+DNLGCKFIRKNNLS VT+P+PLQFPE+RQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

XP_023514670.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

1.4e-221

90.21

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MA  SK F  EETHYAEPEANSQSPAKK+KKSEKKKKRVPPVN KI++LSNHP+K PPLVGYFPSG+DP+KD  EEAVEEQNS+RA+VYRHK KPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        VVSPTG NVDFVGTNYLGEATAGKQHC+YALGVLDKA+QSLKIVPIASNMIFRLDPKVRGSDV E ESPSVANDELSVQ KADRMREL+NLYGTKKSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKL SLKQEDDPETKKDLDGKMKNVVVNKEAL+ ++AQI+RNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFL+QAESEISANYP+FVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS KGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVL LFADEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVT+P+PLQFPE+RQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DBN9 DNA-directed RNA polymerase I subunit rpa49

2.7e-215

87.7

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MA  +KSFELEETHYAEPEANSQSPAKK +KSEKKKKRV  VNA I++LSNHP+KTPPLVGYFPSGF+PHKD  EEAV+EQ SIRARVYR+KNKPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKA+QSLKIVPIA+NMIFRLDPKVRGSDVSEKESP+V +DELSVQ KADRMRELTNLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKLHSLKQ DD +T+KDLD KMKNVVVNKEAL+GT+A+IARNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y L++AE+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKK+CCIFSYITHLIK+KDQ+SMDGVSSAKGHKIPSMLRQKFSSMFS  ESRRLS EK+DLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
        TLRLHFDNLGCKFIRKNNLSLVT+P+PL+FP++  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

7.7e-210

84.74

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MAE +KSFELE+ HY+EP++N QSPAKK+KKSEKKKKRVP VNAKI++LSNHP KTPPLV YFPSGFDPHKD  EEAVEEQ+S+RARVYRHKNKPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKA+QSLKIVPIASNMIFRLDP++RGSDVSE ESPSV N+ELSVQ KA++MRELTNLYGTKKSI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLDGKMKNVVVNKEAL+ T AQIARNIPTYN SATTP+EAYPLDKIILKGEW +LEDLY L+Q E+EISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKK++C IFSYITHLIKYKDQHSM  V+SAK HK PSM+RQKFSSMF T+E+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
         LRLHFDNLGCKFIRKNNLSLVT+P PL+FPE+RQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

A0A6J1HM51 DNA-directed RNA polymerase I subunit rpa49-like

2.0e-221

89.98

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MA  SK F  EETHYAEPEANSQSPAKK+KKSEKKKKRVPPVN KI++LSNHP+K PPLVGYFPSG+DP+KD  EE VEEQNS+RA+VYRHK KPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKA+QSLKIVPIASNMIFRLDPKVRGSDV E ESPSVANDELSVQ KADRMREL+NLYGTKKSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKL SLKQEDDPETKKDLDGKMKNVVVNKEAL+ ++AQI+RNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFL+QAESEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS KGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVT+P+PLQFPE+R+KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

5.3e-211

85.19

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MAE +KSFELE+ HY+EP+ANSQSPAKK+KKSEKKKKRVP VNAKI++LSNHP KTPPLV YFPSGFDPHKD  EEAVEEQ+S+RARVYRHKNKPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKA+QSLKIVPIASNMIFRLDP++RGSDVSE ES SV N+ELSVQ KA++MRELTNLYGTKKSI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKLHSLKQEDDP+TKKDLDGKMKNVVVNKEAL+ T AQIARNIPTYN SATTP+EAYPLDKIILKGEW FLED+Y L+Q E+EISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKK++C IFSYITHLIKYKDQHSM  V+SAK HK PSM+RQKFSSMF T+E+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
         LRLHFDNLGCKFIRKNNLSLVT+P PL+FPE+RQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

A0A6J1KIP6 DNA-directed RNA polymerase I subunit rpa49-like

1.2e-218

89.52

Show/hide

Query:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL
        MA  SK F  EETHYA PEANSQSP KK KKSEKKKKRVPPVN KI++LSNHP+K PPLVGYFPSG+DP+KD  EEAVEEQNS+RA+VYRHK KPNRMQL
Subjt:  MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ
        +VSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKA+QSLKIVPIASNMIFRLDPKV GSDV E ESPSVANDELSVQ KADRMREL+NLYGTKKSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQ

Query:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL
        AKKL SLKQEDDPETKKDLDGKMKNVVVNKEAL+ ++AQI+RNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFL+QAESEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS +GHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR
        TLR+H+DNLGCKFIRKNNLS VT+P+PLQFPE+RQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

5.6e-08

23.67

Show/hide

Query:  ANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGE
        A  +   KKRK  +            ++IL       PPLV    SGF P ++T           R ++ +  N+ NR   ++  T   V F   N   +
Subjt:  ANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGE

Query:  ATAGKQHCTYALGVLDKASQSLKIVPIA-SNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIK--QAKKLHSLKQEDDPETK
        +TA  +   Y L V DK  +  KIVP    N   R    ++  D   K+     +  +      ++   L   +GT+KS K    +  + +K E   + K
Subjt:  ATAGKQHCTYALGVLDKASQSLKIVPIA-SNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIK--QAKKLHSLKQEDDPETK

Query:  KDLDG---KMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESE-----ISANYPSFVRNRIYKLQDIQDEEE
          L     K    +  +E +    AQ  R IP  N  A + ++AY L+ II K E+  +     L   +       +   +  F+  R  +L  I++ ++
Subjt:  KDLDG---KMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESE-----ISANYPSFVRNRIYKLQDIQDEEE

Query:  KKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKI---PSMLRQKFSSMFSTTE---SRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTL
        K+    I  YI+ L  +       G       K+   P +L       F+ T    S ++S+ + D +I ++LVL L  D +S+D   +A DL       
Subjt:  KKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKI---PSMLRQKFSSMFSTTE---SRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTL

Query:  RLHFDNLGCKFIR---------------KNNLSLVTVPIPLQFPEMRQKRRR
           F  +GC+ +                  N     + IPL+FP+ R+ R R
Subjt:  RLHFDNLGCKFIR---------------KNNLSLVTVPIPLQFPEMRQKRRR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

1.2e-98

44.67

Show/hide

Query:  EETHYAEPEANSQSPAKKRKKSEKKKKRVPP----------VNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHK-NKPNRMQ
        E+  Y   E +  +P + +KK  K KK              V  K+  ++  PD+  P+V YF +G+DP K   +       + +  VY+HK +   R+Q
Subjt:  EETHYAEPEANSQSPAKKRKKSEKKKKRVPP----------VNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHK-NKPNRMQ

Query:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKE-SPSVANDELSVQAKADRMRELTNLYGTKKSI
        +VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++ +++L+I+P+A N I RL+P+V+  + +E+E S S    EL      +R R     Y TKK++
Subjt:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKE-SPSVANDELSVQAKADRMRELTNLYGTKKSI

Query:  KQAKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISAN-YPSFVRNRI
         + KK  +L   DD  T+K LDGK+  + VN  AL+GT + +ARNIP YN +ATT  EAYPL+KII KG+W FLED+Y+L+Q E+E +   YP FVRNR+
Subjt:  KQAKKLHSLKQEDDPETKKDLDGKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISAN-YPSFVRNRI

Query:  YKLQDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRT
        Y+L+DI+D+ +K+ VC   + +THL+K+KD++SM+G  SAK HK+P + RQKF+SMF  +ES R+  +K +LLIS+VLVL+L  D F +DP DIAKDLR 
Subjt:  YKLQDIQDEEEKKKVCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRT

Query:  SPFTLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRR
        S   LR HF  LGCKF+++N+ ++ T+P PL FPE+ ++RR
Subjt:  SPFTLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAGAATATTCTAAATCTTTTGAATTGGAAGAAACCCATTATGCAGAACCAGAAGCAAATTCTCAGTCTCCAGCAAAGAAGAGGAAGAAGAGTGAAAAGAAGAAGAA
GCGAGTTCCACCAGTGAATGCAAAAATCGAAATCCTCAGCAACCATCCTGACAAAACTCCACCACTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATACCA
AAGAGGAAGCAGTCGAGGAACAAAATTCCATAAGGGCTAGGGTTTATAGGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTAAGTCCAACAGGGTCGAATGTGGAT
TTTGTTGGTACCAATTATTTGGGCGAGGCTACTGCTGGGAAACAGCATTGCACCTATGCTCTTGGTGTTCTTGATAAGGCATCCCAAAGCTTAAAGATTGTGCCTATTGC
ATCAAATATGATATTTAGATTGGATCCAAAAGTCAGAGGTTCAGATGTTTCTGAAAAGGAATCTCCAAGTGTGGCAAATGACGAGCTTTCCGTTCAGGCGAAAGCTGATA
GAATGAGAGAGCTGACCAATCTCTATGGAACAAAGAAGTCAATAAAACAGGCGAAGAAGCTGCATTCTTTGAAGCAAGAGGATGATCCTGAGACCAAGAAGGATCTAGAT
GGGAAAATGAAAAATGTAGTGGTAAACAAAGAGGCCTTGAAAGGTACAGATGCACAAATTGCTCGCAATATACCTACATATAATGCTTCTGCAACTACTCCACAAGAAGC
TTACCCGCTCGACAAGATTATCCTCAAGGGAGAATGGGGTTTCCTGGAAGATCTTTATTTCCTTATGCAAGCAGAATCTGAAATAAGTGCAAATTATCCATCCTTTGTCC
GCAACAGAATTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAGAAGAAGGTCTGCTGTATATTTTCATACATCACTCATCTAATAAAGTATAAGGACCAGCATTCT
ATGGATGGTGTTTCTTCTGCAAAGGGCCATAAAATTCCTAGCATGCTACGCCAAAAGTTCTCATCCATGTTTTCGACTACTGAGTCGAGAAGACTGTCAGCCGAGAAAAC
CGATCTTCTCATTAGCCATGTTTTGGTGCTTACGCTATTTGCCGACGAATTCAGCAGTGATCCATCAGACATAGCAAAGGATCTGAGAACCAGCCCTTTCACTCTAAGGC
TCCATTTTGATAATCTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCATTGGTTACGGTTCCCATCCCGCTTCAATTTCCCGAGATGAGGCAAAAGAGACGACGATAA

mRNA sequence

Show/hide mRNA sequence

ATTAAATAAAAAATAAATAAAAAAAGAGAAAACCCTAAACCCTTTCTTCTTCTATCACTCACACTGCTTCTTCTTCTTCACGCCGGCTCCTCCTCCCTTTCAGCAGCTCT
GTGTCTCCGTCGCCGCCGCCACCGGCTCTCTCTCTTTTCGTCGACGTCTTTCTTCAGCTCGTGCTGCCAACGCCTTCCTCCTAGCGATCTGCAACGATTTTCTAGTCTCT
TTTGTTTACTGCCATGACAGGTTTGGTTCCAGAAGGATCCCTATTTGATTCTCGCCAATATGATTCTAAAATGAATAATATGTAATTCCCAAAGCTTCTTGCTCCCAGAA
AATTGACGTGTTACGTTTTCTTCAACGAGCTGAAGCTCTGCGTGTTGACGATTTTGGTGCTTTGTAAAATCCCACGCTTTCTTTGAATTCTACACACACGGAGTTCGTTA
ACAGAATTAATGGCAGAATATTCTAAATCTTTTGAATTGGAAGAAACCCATTATGCAGAACCAGAAGCAAATTCTCAGTCTCCAGCAAAGAAGAGGAAGAAGAGTGAAAA
GAAGAAGAAGCGAGTTCCACCAGTGAATGCAAAAATCGAAATCCTCAGCAACCATCCTGACAAAACTCCACCACTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACA
AGGATACCAAAGAGGAAGCAGTCGAGGAACAAAATTCCATAAGGGCTAGGGTTTATAGGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTAAGTCCAACAGGGTCG
AATGTGGATTTTGTTGGTACCAATTATTTGGGCGAGGCTACTGCTGGGAAACAGCATTGCACCTATGCTCTTGGTGTTCTTGATAAGGCATCCCAAAGCTTAAAGATTGT
GCCTATTGCATCAAATATGATATTTAGATTGGATCCAAAAGTCAGAGGTTCAGATGTTTCTGAAAAGGAATCTCCAAGTGTGGCAAATGACGAGCTTTCCGTTCAGGCGA
AAGCTGATAGAATGAGAGAGCTGACCAATCTCTATGGAACAAAGAAGTCAATAAAACAGGCGAAGAAGCTGCATTCTTTGAAGCAAGAGGATGATCCTGAGACCAAGAAG
GATCTAGATGGGAAAATGAAAAATGTAGTGGTAAACAAAGAGGCCTTGAAAGGTACAGATGCACAAATTGCTCGCAATATACCTACATATAATGCTTCTGCAACTACTCC
ACAAGAAGCTTACCCGCTCGACAAGATTATCCTCAAGGGAGAATGGGGTTTCCTGGAAGATCTTTATTTCCTTATGCAAGCAGAATCTGAAATAAGTGCAAATTATCCAT
CCTTTGTCCGCAACAGAATTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAGAAGAAGGTCTGCTGTATATTTTCATACATCACTCATCTAATAAAGTATAAGGAC
CAGCATTCTATGGATGGTGTTTCTTCTGCAAAGGGCCATAAAATTCCTAGCATGCTACGCCAAAAGTTCTCATCCATGTTTTCGACTACTGAGTCGAGAAGACTGTCAGC
CGAGAAAACCGATCTTCTCATTAGCCATGTTTTGGTGCTTACGCTATTTGCCGACGAATTCAGCAGTGATCCATCAGACATAGCAAAGGATCTGAGAACCAGCCCTTTCA
CTCTAAGGCTCCATTTTGATAATCTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCATTGGTTACGGTTCCCATCCCGCTTCAATTTCCCGAGATGAGGCAAAAGAGA
CGACGATAAGCGAGATGGTTTGATTGTAGTTGTTATTACTGTTATTGTAATTTGAAGAAGCTGATTTCTCTATACAGGAAAAGCTCGAGCAGTTTTGTTGAGTAAAACGG
GTAAATGATCATCATATTGAGCAGTTTTGTTGCAAATGGCAACTTGTTTCTATGAAATGGCTTTGGCATAGAATGGTGTTTTCTTTTTTGGAAGTTGGAACTCTTCTGAT
TGTGAAGCTTATCTTGAAATGAGTCAATTTATTGAGTTTTCTTCCTCTGCGTGGG

Protein sequence

Show/hide protein sequence

MAEYSKSFELEETHYAEPEANSQSPAKKRKKSEKKKKRVPPVNAKIEILSNHPDKTPPLVGYFPSGFDPHKDTKEEAVEEQNSIRARVYRHKNKPNRMQLVVSPTGSNVD
FVGTNYLGEATAGKQHCTYALGVLDKASQSLKIVPIASNMIFRLDPKVRGSDVSEKESPSVANDELSVQAKADRMRELTNLYGTKKSIKQAKKLHSLKQEDDPETKKDLD
GKMKNVVVNKEALKGTDAQIARNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLMQAESEISANYPSFVRNRIYKLQDIQDEEEKKKVCCIFSYITHLIKYKDQHS
MDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLGCKFIRKNNLSLVTVPIPLQFPEMRQKRRR

Tan0005791 (gene) of Snake gourd v1 genome