| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0045342.1 gag/pol protein [Cucumis melo var. makuwa] | 7.4e-44 | 51.74 | Show/hide |
Query: RGSTSGTKYVVSSSPKGKRKKMKKGKADRA---ASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEITLRVGIEEVVSAAA
R G V++ KGK K KGK A K + L +K A V SSL + SS++QL E+E+TL+VG +V+SA A
Subjt: RGSTSGTKYVVSSSPKGKRKKMKKGKADRA---ASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEITLRVGIEEVVSAAA
Query: IDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELWNGR
+ K YGY+YLM KSE LEKFKEYK EVENLL P +PQQN VSERRNR LLD+VRSMM+YA+LP FWGY +ETAVHILNNVPS SV E P ELW GR
Subjt: IDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELWNGR
Query: KGSLHHFRIWVGDLILDTLCGCDRFILDTN
K SL HFRIW GC +L TN
Subjt: KGSLHHFRIWVGDLILDTLCGCDRFILDTN
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| KAA0050621.1 gag/pol protein [Cucumis melo var. makuwa] | 1.1e-44 | 54.42 | Show/hide |
Query: GSTSGTKYVVSSSPKGKRKKMKKGKADRAASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEITLRVGIEEVVSAAAIDMV
G G+ V KGK K + KGK + KT + V G T V SSL + SS++QL E+E+TL+VG V+SA A+
Subjt: GSTSGTKYVVSSSPKGKRKKMKKGKADRAASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEITLRVGIEEVVSAAAIDMV
Query: KLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELWNGRKGSL
K YGY+YLM KSE LEKFKEYKTEVENLL PQQNGVSE RN+TLLDMVRSMMSYA+LP SFWGY VETAVHILNNVPS SV E FELW GRK SL
Subjt: KLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELWNGRKGSL
Query: HHFRIWVGDLILDTLCGCDRFILDTN
HFRIW GC +L TN
Subjt: HHFRIWVGDLILDTLCGCDRFILDTN
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| KAA0058278.1 gag/pol protein [Cucumis melo var. makuwa] | 2.8e-43 | 67.59 | Show/hide |
Query: ITLRVGIEEVVSAAAIDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVP
+ R G E +S ID YGY+YLM KSE LEKFKEYKTEVENLL P PQQNGVSERRNRTLLDMVRSMM YA+LP SFWGY VETAVHILNNVP
Subjt: ITLRVGIEEVVSAAAIDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVP
Query: SNSVCEIPFELWNGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
S SV EIPFELW RK SL HFRIW GC +L TN
Subjt: SNSVCEIPFELWNGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
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| KAA0062925.1 gag/pol protein [Cucumis melo var. makuwa] | 8.1e-43 | 51.07 | Show/hide |
Query: KYVVSSSPKGKRKKMKKGKA-DRAASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKK------------GISSWQQLREAEITLRVGIEEVVS
++V SSS K +K K+GK + +GK+ K+ K + L ++K SS +QL E+E+TL+VG +V+S
Subjt: KYVVSSSPKGKRKKMKKGKA-DRAASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKK------------GISSWQQLREAEITLRVGIEEVVS
Query: AAAIDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELW
A A+ K YGY+YLM KSE LEKFKEYK EVENLL P PQQNGVSERRNR LLDMVRSMMSYA+LP SFWGY VETAVHILNNVPS SV E F+LW
Subjt: AAAIDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELW
Query: NGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
GRK SL HFRIW GC +L TN
Subjt: NGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
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| KAA0064189.1 gag/pol protein [Cucumis melo var. makuwa] | 8.1e-43 | 49 | Show/hide |
Query: PEVEAKVAFRSFHRGSTSGTKYVVSSSPKGKRKKMKKGKADR---AASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEIT
P ++ K H S +++ SSS K +K K+GK A KGK ++RK + ++ + K+ SS++QL E+E+T
Subjt: PEVEAKVAFRSFHRGSTSGTKYVVSSSPKGKRKKMKKGKADR---AASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEIT
Query: LRVGIEEVVSAAAIDMVKLYGYIYLMHRKSETLEKFKEYKTE---VEN-----LLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVH
L+VG +V+SA A+ K YGY+YLM KSE LEKFKEYKTE +E+ L AP PQQNGVSERRNRTLLDMVRSMMSYA+LP SFWGY VET VH
Subjt: LRVGIEEVVSAAAIDMVKLYGYIYLMHRKSETLEKFKEYKTE---VEN-----LLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVH
Query: ILNNVPSNSVCEIPFELWNGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
ILNNVPS SV PFELW GRK SL HFRIW GC +L TN
Subjt: ILNNVPSNSVCEIPFELWNGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TPP4 Gag/pol protein | 3.6e-44 | 51.74 | Show/hide |
Query: RGSTSGTKYVVSSSPKGKRKKMKKGKADRA---ASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEITLRVGIEEVVSAAA
R G V++ KGK K KGK A K + L +K A V SSL + SS++QL E+E+TL+VG +V+SA A
Subjt: RGSTSGTKYVVSSSPKGKRKKMKKGKADRA---ASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEITLRVGIEEVVSAAA
Query: IDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELWNGR
+ K YGY+YLM KSE LEKFKEYK EVENLL P +PQQN VSERRNR LLD+VRSMM+YA+LP FWGY +ETAVHILNNVPS SV E P ELW GR
Subjt: IDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELWNGR
Query: KGSLHHFRIWVGDLILDTLCGCDRFILDTN
K SL HFRIW GC +L TN
Subjt: KGSLHHFRIWVGDLILDTLCGCDRFILDTN
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| A0A5A7UAP2 Gag/pol protein | 5.5e-45 | 54.42 | Show/hide |
Query: GSTSGTKYVVSSSPKGKRKKMKKGKADRAASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEITLRVGIEEVVSAAAIDMV
G G+ V KGK K + KGK + KT + V G T V SSL + SS++QL E+E+TL+VG V+SA A+
Subjt: GSTSGTKYVVSSSPKGKRKKMKKGKADRAASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEITLRVGIEEVVSAAAIDMV
Query: KLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELWNGRKGSL
K YGY+YLM KSE LEKFKEYKTEVENLL PQQNGVSE RN+TLLDMVRSMMSYA+LP SFWGY VETAVHILNNVPS SV E FELW GRK SL
Subjt: KLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELWNGRKGSL
Query: HHFRIWVGDLILDTLCGCDRFILDTN
HFRIW GC +L TN
Subjt: HHFRIWVGDLILDTLCGCDRFILDTN
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| A0A5A7USZ2 Gag/pol protein | 1.4e-43 | 67.59 | Show/hide |
Query: ITLRVGIEEVVSAAAIDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVP
+ R G E +S ID YGY+YLM KSE LEKFKEYKTEVENLL P PQQNGVSERRNRTLLDMVRSMM YA+LP SFWGY VETAVHILNNVP
Subjt: ITLRVGIEEVVSAAAIDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVP
Query: SNSVCEIPFELWNGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
S SV EIPFELW RK SL HFRIW GC +L TN
Subjt: SNSVCEIPFELWNGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
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| A0A5A7VAK2 Gag/pol protein | 3.9e-43 | 51.07 | Show/hide |
Query: KYVVSSSPKGKRKKMKKGKA-DRAASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKK------------GISSWQQLREAEITLRVGIEEVVS
++V SSS K +K K+GK + +GK+ K+ K + L ++K SS +QL E+E+TL+VG +V+S
Subjt: KYVVSSSPKGKRKKMKKGKA-DRAASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKK------------GISSWQQLREAEITLRVGIEEVVS
Query: AAAIDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELW
A A+ K YGY+YLM KSE LEKFKEYK EVENLL P PQQNGVSERRNR LLDMVRSMMSYA+LP SFWGY VETAVHILNNVPS SV E F+LW
Subjt: AAAIDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCEIPFELW
Query: NGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
GRK SL HFRIW GC +L TN
Subjt: NGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
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| A0A5A7VF82 Gag/pol protein | 3.9e-43 | 49 | Show/hide |
Query: PEVEAKVAFRSFHRGSTSGTKYVVSSSPKGKRKKMKKGKADR---AASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEIT
P ++ K H S +++ SSS K +K K+GK A KGK ++RK + ++ + K+ SS++QL E+E+T
Subjt: PEVEAKVAFRSFHRGSTSGTKYVVSSSPKGKRKKMKKGKADR---AASRKGKKTRKLQRKVSVSTAMGRTTRSVTVSSSLPTGRKKGISSWQQLREAEIT
Query: LRVGIEEVVSAAAIDMVKLYGYIYLMHRKSETLEKFKEYKTE---VEN-----LLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVH
L+VG +V+SA A+ K YGY+YLM KSE LEKFKEYKTE +E+ L AP PQQNGVSERRNRTLLDMVRSMMSYA+LP SFWGY VET VH
Subjt: LRVGIEEVVSAAAIDMVKLYGYIYLMHRKSETLEKFKEYKTE---VEN-----LLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVH
Query: ILNNVPSNSVCEIPFELWNGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
ILNNVPS SV PFELW GRK SL HFRIW GC +L TN
Subjt: ILNNVPSNSVCEIPFELWNGRKGSLHHFRIWVGDLILDTLCGCDRFILDTN
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.4e-13 | 37.04 | Show/hide |
Query: YIYLMHRK---SETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCE---IPFELWNGRKG
Y+Y+ + + S + +F K +L P PQ NGVSER RT+ + R+M+S A+L KSFWG V TA +++N +PS ++ + P+E+W+ +K
Subjt: YIYLMHRK---SETLEKFKEYKTEVENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVCE---IPFELWNGRKG
Query: SLHHFRIW
L H R++
Subjt: SLHHFRIW
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 7.5e-15 | 31.65 | Show/hide |
Query: TLEKFKEYKTE---VENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVC-EIPFELWNGRKGSLHHFRIWVGDL
T +F+EY + P PQ NGV+ER NRT+++ VRSM+ A+LPKSFWG V+TA +++N PS + EIP +W ++ S H +++
Subjt: TLEKFKEYKTE---VENLLAPCMPQQNGVSERRNRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSVC-EIPFELWNGRKGSLHHFRIWVGDL
Query: ILDTLCGCDRFILDTNEGQNQV------------GSWELNYARWNSLVRAFSETRGVV
GC F E + ++ G E Y W+ + + +R VV
Subjt: ILDTLCGCDRFILDTNEGQNQV------------GSWELNYARWNSLVRAFSETRGVV
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| P92512 Uncharacterized mitochondrial protein AtMg00710 | 2.0e-04 | 44 | Show/hide |
Query: NRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSV-CEIPFELW
NRT+++ VRSM+ LPK+F TAVHI+N PS ++ +P E+W
Subjt: NRTLLDMVRSMMSYARLPKSFWGYVVETAVHILNNVPSNSV-CEIPFELW
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.2e-06 | 23.08 | Show/hide |
Query: IDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLL--------------------------------APCMPQQNGVSERRNRTLLDMVRSMMSYARLPKS
+D Y ++Y + +KS+ E F +K +EN P P+ NG+SER++R +++ +++S+A +PK+
Subjt: IDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLL--------------------------------APCMPQQNGVSERRNRTLLDMVRSMMSYARLPKS
Query: FWGYVVETAVHILNNVPSNSV-CEIPFELWNGRKGSLHHFRIW
+W Y AV+++N +P+ + E PF+ G + R++
Subjt: FWGYVVETAVHILNNVPSNSV-CEIPFELWNGRKGSLHHFRIW
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.7e-06 | 22.38 | Show/hide |
Query: IDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLL--------------------------------APCMPQQNGVSERRNRTLLDMVRSMMSYARLPKS
+D Y ++Y + +KS+ + F +K+ VEN P P+ NG+SER++R +++M +++S+A +PK+
Subjt: IDMVKLYGYIYLMHRKSETLEKFKEYKTEVENLL--------------------------------APCMPQQNGVSERRNRTLLDMVRSMMSYARLPKS
Query: FWGYVVETAVHILNNVPSNSV-CEIPFELWNGRKGSLHHFRIW
+W Y AV+++N +P+ + + PF+ G+ + +++
Subjt: FWGYVVETAVHILNNVPSNSV-CEIPFELWNGRKGSLHHFRIW
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