; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0005813 (gene) of Snake gourd v1 genome

Gene IDTan0005813
OrganismTrichosanthes anguina (Snake gourd v1)
Description39S ribosomal protein L47, mitochondrial
Genome locationLG09:72204105..72207667
RNA-Seq ExpressionTan0005813
SyntenyTan0005813
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR010729 - Ribosomal protein L47, mitochondrial
IPR036049 - Ribosomal protein L29/L35 superfamily
IPR038340 - MRP-L47 superfamily, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138121.1 39S ribosomal protein L47, mitochondrial [Cucumis sativus]2.2e-6793.71Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRTFLAAARSETSS TAAAA+TAR GYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        PNPER+PKVRKSMCRIK VLTERAI+EPDPRRSAEMKRMINAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

XP_008453113.1 PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]8.3e-6793.71Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRTFLAAARSETSS TAAAA+TAR GYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        PNPER+ KVRKSMCRIK VLTERAI+EPDPRRSAEMKRMINAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

XP_022135437.1 39S ribosomal protein L47, mitochondrial [Momordica charantia]2.4e-6695.1Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRT LAAARSETSS  AAAAST R GYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
         NPER+PKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

XP_023530690.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo]4.1e-6690.91Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTR+FGRTFLAAARSE S+ TAAA STAR GYNPLEEFFE  RSP+DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        PNPER+PKVRKSMCRIKQVLTERAI+EPDPRRSAEMKRM+NAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

XP_038879389.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]2.3e-6995.8Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRTFLAAARSETSS T AAA+TARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        PNPER+PKVRKSMCRIKQVLTERAI+EPDPRRSAEMKRMINAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

TrEMBL top hitse value%identityAlignment
A0A0A0LS48 Uncharacterized protein1.1e-6793.71Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRTFLAAARSETSS TAAAA+TAR GYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        PNPER+PKVRKSMCRIK VLTERAI+EPDPRRSAEMKRMINAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

A0A1S3BWK4 39S ribosomal protein L47, mitochondrial4.0e-6793.71Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRTFLAAARSETSS TAAAA+TAR GYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        PNPER+ KVRKSMCRIK VLTERAI+EPDPRRSAEMKRMINAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

A0A6J1C2P6 39S ribosomal protein L47, mitochondrial1.2e-6695.1Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRT LAAARSETSS  AAAAST R GYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
         NPER+PKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

A0A6J1I0P6 39S ribosomal protein L47, mitochondrial-like2.6e-6690.91Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        M LTR+FGRTFLAAARSETS+ TAAA STAR GYNPLEEFFEA RSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        PNPER+PKVRKSMCRIKQVLTERAI+EPDPRR AE+KRM+NAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

A0A6J1JCZ2 39S ribosomal protein L47, mitochondrial1.3e-6593.01Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRV GR FLAAARSETSS  AAAASTA  GYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        PNPER+PKVRKSMCRIKQVLTERAI+EPDPRRSAEMKRM+NAL
Subjt:  PNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

SwissProt top hitse value%identityAlignment
P87232 54S ribosomal protein L4, mitochondrial1.1e-1044.57Show/hide
Query:  NPLEEFFEADRS-PDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFP--NPERVPKVRKSMCRIKQVLTER
        +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P  + ERV  V K+M  IK VL ER
Subjt:  NPLEEFFEADRS-PDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFP--NPERVPKVRKSMCRIKQVLTER

Q08DT6 39S ribosomal protein L47, mitochondrial1.9e-1349.43Show/hide
Query:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVLTER
        LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  + +V+ ER
Subjt:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVLTER

Q2H080 54S ribosomal protein L4, mitochondrial1.3e-0941.35Show/hide
Query:  LEEFFEADRSPDDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNP---ERVPKVRKSMCRIKQVLTERAIEEPDPR
        L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     +   L F      ER   VR++M  IK VLTER     D  
Subjt:  LEEFFEADRSPDDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNP---ERVPKVRKSMCRIKQVLTERAIEEPDPR

Query:  RSAE
        + AE
Subjt:  RSAE

Q8K2Y7 39S ribosomal protein L47, mitochondrial1.1e-1349.43Show/hide
Query:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVLTER
        LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  + +V+ ER
Subjt:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVLTER

Q9HD33 39S ribosomal protein L47, mitochondrial7.2e-1348.28Show/hide
Query:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVLTER
        LEEFF+  ++   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  + +V+ ER
Subjt:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVLTER

Arabidopsis top hitse value%identityAlignment
AT1G07830.1 ribosomal protein L29 family protein1.5e-5879.86Show/hide
Query:  MFLTRVFGRTFLAAARSETSSVT-AAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLR
        MFLTR  GR FLAAA + + S T AAAAST R   NPLEEFFE DRS D+DKPVVYGR WKASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++
Subjt:  MFLTRVFGRTFLAAARSETSSVT-AAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLR

Query:  FPNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        FPNPER+PKVR+SMCRIK VLTERAIEEPD RRSAEMKRM+N +
Subjt:  FPNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGTGACAGCTGCTGCTGCTTCTACAGCTAGGATGGGGTATAATCCGCT
CGAGGAGTTTTTTGAGGCCGATAGAAGTCCAGACGATGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATA
AGTTATGGTATGTCCTCTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTCATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCGTTCCCAAGGTGAGG
AAGTCAATGTGTCGAATCAAGCAGGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCCGCAGAGATGAAGAGGATGATAAACGCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
TGTCGGTATTTTACGTCTTGCCCTCAGTTCTTAGTTCCCTCGCAGTTCGCAGACTTGGCGTCGCCACTTCTTCCTCGTCGGAGCGCAGATCGTTGCCGCTTGCCGGAGCC
AACCCTTGTTTGAGCCTTTGCAATTCACAATCTTTCCTTTCTGAGTTCAGTCCATCGCACGACCTTCAGAATCGGAGCATTGGTGCAGCCATGTTTCTGACACGAGTGTT
TGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGTGACAGCTGCTGCTGCTTCTACAGCTAGGATGGGGTATAATCCGCTCGAGGAGTTTTTTGAGGCCG
ATAGAAGTCCAGACGATGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGTTATGGTATGTCCTCTTG
AAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTCATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCGTTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAA
GCAGGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCCGCAGAGATGAAGAGGATGATAAACGCTCTTTGATAAGCTAAACAACATTTCAAAGCCAGCC
TTGTATGTGGTGGAGTTTACCATCCCGGTTACGAAGGGAGGAATAGTTAGCGAGATAATACAAACACCACCCTATCGATTTCGTTCATTCTGTAATCAAGGATCTGATTA
GAAGCCTAGTTATTGTTTTATAATTTCTAATCTAGTTTTTAATCGACGGTAATCAAAGTTTTGGAGATGTTTTTATTTATGCCAACATTATGATGATGGCCAAGCTTATT
CTAGAAGATTTGGAATACACACAAATTAGATCTGATGTGTGTGTGTGTGGAGTAAGTTGAAAATGAAAGAGTTGACAAAAGAAAAAAAAAGAAGGAAAAAGGAAAAAAGA
AAAGGAAAAATATTGATGGTTTGATGTGCTGTTGGGAAAATGAAAGTAGTATCGTCATGAATGTTAGGAGGACCATAAACACAAAGGTAGAATGTGTGTTGATGCTTTGG
CTTTGATGATCCTGTGCCAGTGGCTCATTCCAATTCTATTCCCTACACAAAGGGGGGCAAACCCACATGATTGGATTAGACATCTTGCTTTTTGATTAGCTTCTTAATCA
AGATTGTTTATTCATGAGGGGCAGGCAAACAAAGGAGAGGGGCCCTCTTCCTCTTCCTCTTTCC
Protein sequenceShow/hide protein sequence
MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVR
KSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL