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Tan0005834 (gene) of Snake gourd v1 genome

Gene IDTan0005834
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTetratricopeptide-like helical
Genome locationLG01:13818073..13818453
RNA-Seq ExpressionTan0005834
SyntenyTan0005834
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2860.94Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMST----EFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNC
        MSVSLEALAMAGI SNEWAMDAEEW RN E+EN VPPHLLA EDDDD+NV ST     F   GFF   RRED GA  ++C    I+    K +EKRA N 
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMST----EFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNC

Query:  LSSVGIMARAILGFLMVMTMKIITSKES
        +SSV I+ R ILGFL+V  +KII++  S
Subjt:  LSSVGIMARAILGFLMVMTMKIITSKES

KAG6600647.1 hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia]4.1e-3366.67Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTEFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNCLSSV
        MSVSLEALAMAGIDSNE AMDAEEW RN EME ++PPHLLA ++D++E+ MST+F AT     C R+D+G GGV CSP  IMW+ RKI EKR LNCLSS+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTEFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNCLSSV

Query:  GIMARAILGFLMVMTMKIITSKESKS
         I+  A++GFLM MT+KII SK SKS
Subjt:  GIMARAILGFLMVMTMKIITSKESKS

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-2860.16Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMST----EFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNC
        MSVSLEALAMAGI SNEWAMDAEEW RN E+EN VPPHLLA EDDDD+NV ST     F   GFF    RED GA  ++C    I+    K +EKRA N 
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMST----EFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNC

Query:  LSSVGIMARAILGFLMVMTMKIITSKES
        +SSV I+ R ILGFL+V  +KII++  S
Subjt:  LSSVGIMARAILGFLMVMTMKIITSKES

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]6.5e-2355.73Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTE------FSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRAL
        MSVSLEALAMAGIDSNEW MDA+EW RN E++  VPPHLLA E+DD++    T       F   G F G RR D  A G       I +   K+IEKRA 
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTE------FSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRAL

Query:  NCLSSVGIMARAILGFLMVMTMKIITSKESK
        N ++SV I+ R ILGFLMVMTMKII+++ SK
Subjt:  NCLSSVGIMARAILGFLMVMTMKIITSKESK

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.5e-3569.05Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTEFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNCLSSV
        MSVSLEALAMAGIDSNEWAMDAEEW RN EME  +PPHLLA ++DD+E+ MST+F AT     C R+DDG GGV CSP  IMW+ RKI EKR LNCLSS+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTEFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNCLSSV

Query:  GIMARAILGFLMVMTMKIITSKESKS
         I+  A++GFLM MT+KII SK SKS
Subjt:  GIMARAILGFLMVMTMKIITSKESKS

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein2.0e-1455.21Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNI-EMENH--VPPHLLAGEDDDDENVMSTEFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRA
        M VSLEALAMAGIDSNEWAMDAEEW  N  +MEN   +PPHLLA  D+D+EN+ + E   +G      R+DDG   V+C+  R     RK++EKRA
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNI-EMENH--VPPHLLAGEDDDDENVMSTEFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRA

A0A0A0KWE7 Uncharacterized protein1.1e-2356.03Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDD---DENVMSTE-----FSATGFFHGCR----REDDGAG----GVYCSPARIMWY
        MSVSLEALAMAGIDSNEWAMDAEEW RN E++  VPPHLLA E+DD   DE+V ++      F   G F G R    + D G G    G++CS       
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDD---DENVMSTE-----FSATGFFHGCR----REDDGAG----GVYCSPARIMWY

Query:  FRKIIEKRALNCLSSVGIMARAILGFLMVMTMKIITSKESK
          K+IEKRA N +SSV I+ R ILGFLMVMTMKII+++ SK
Subjt:  FRKIIEKRALNCLSSVGIMARAILGFLMVMTMKIITSKESK

A0A5A7TS68 Tetratricopeptide-like helical2.5e-2055.37Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTE------FSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRAL
        MSVSLEALAMAGIDSNEW MDA+EW RN E++  VPPHLLA E+DD++    T       F   G F G RR D  A G +     I +   K+IEKRA 
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTE------FSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRAL

Query:  NCLSSVGIMARAILGFLMVMT
        N ++SV I+ R ILGFLMVMT
Subjt:  NCLSSVGIMARAILGFLMVMT

A0A5D3CZU0 Tetratricopeptide-like helical3.2e-2355.73Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTE------FSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRAL
        MSVSLEALAMAGIDSNEW MDA+EW RN E++  VPPHLLA E+DD++    T       F   G F G RR D  A G       I +   K+IEKRA 
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTE------FSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRAL

Query:  NCLSSVGIMARAILGFLMVMTMKIITSKESK
        N ++SV I+ R ILGFLMVMTMKII+++ SK
Subjt:  NCLSSVGIMARAILGFLMVMTMKIITSKESK

A0A6J1FX98 uncharacterized protein LOC1114478807.2e-3669.05Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTEFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNCLSSV
        MSVSLEALAMAGIDSNEWAMDAEEW RN EME  +PPHLLA ++DD+E+ MST+F AT     C R+DDG GGV CSP  IMW+ RKI EKR LNCLSS+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTEFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNCLSSV

Query:  GIMARAILGFLMVMTMKIITSKESKS
         I+  A++GFLM MT+KII SK SKS
Subjt:  GIMARAILGFLMVMTMKIITSKESKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein5.5e-0447.73Show/hide
Query:  LEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDE
        +EALAMAG+D  EW +  EEW      E+ VP HLLA +  ++E
Subjt:  LEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGGAAGAAATATTGAAATGGAGAACCACGTTCCGCC
GCATTTATTAGCCGGTGAAGACGATGACGACGAAAACGTTATGAGTACTGAGTTTTCAGCCACCGGATTCTTCCACGGCTGTCGCCGGGAAGATGACGGGGCTGGTGGAG
TGTACTGCTCTCCGGCGAGGATCATGTGGTATTTCAGAAAAATTATAGAGAAAAGAGCTTTGAATTGCCTGAGCTCGGTGGGAATAATGGCGAGAGCTATTTTAGGGTTC
CTTATGGTGATGACCATGAAGATAATAACTTCAAAAGAATCCAAATCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGGAAGAAATATTGAAATGGAGAACCACGTTCCGCC
GCATTTATTAGCCGGTGAAGACGATGACGACGAAAACGTTATGAGTACTGAGTTTTCAGCCACCGGATTCTTCCACGGCTGTCGCCGGGAAGATGACGGGGCTGGTGGAG
TGTACTGCTCTCCGGCGAGGATCATGTGGTATTTCAGAAAAATTATAGAGAAAAGAGCTTTGAATTGCCTGAGCTCGGTGGGAATAATGGCGAGAGCTATTTTAGGGTTC
CTTATGGTGATGACCATGAAGATAATAACTTCAAAAGAATCCAAATCCTAA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAEEWGRNIEMENHVPPHLLAGEDDDDENVMSTEFSATGFFHGCRREDDGAGGVYCSPARIMWYFRKIIEKRALNCLSSVGIMARAILGF
LMVMTMKIITSKESKS