; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0005861 (gene) of Snake gourd v1 genome

Gene IDTan0005861
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTranscription termination factor like
Genome locationLG04:83524053..83524804
RNA-Seq ExpressionTan0005861
SyntenyTan0005861
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581607.1 hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia]3.6e-2680.22Show/hide
Query:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGD
        M+  LE D   IF+KIAMFV VQVLVYLILSKSSNLFS D+KLRSLSFKPARSVSIRR LAALSD+P GGELSPSS V TPSSVRR RS D
Subjt:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGD

KAG6606858.1 hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3080Show/hide
Query:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDGGRF
        M+P LE DAGE FVKIAMF+LVQ+LVY ILS+SS+LFS+D+KL+SLSFKPARSVSIRRFLAALSDMPSGGELSPSSRV TPS + R  S DGGRF
Subjt:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDGGRF

KAG7018107.1 hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-2880Show/hide
Query:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDGGRF
        M+  LE D   IF+KIAMFV VQVLVYLILSKSSNLFS D+KLRSLSFKPARSVSIRR LAALSD+P GGELSPSS V TPSSVRR RS D GRF
Subjt:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDGGRF

XP_011651805.2 uncharacterized protein LOC105434941 [Cucumis sativus]5.4e-3078.72Show/hide
Query:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDGGR
        M P  +TDAGE+FV+IAMFV +Q+LVYLILSKSSNLFS D+K+RSLSFKPARSVSIRRFLAALSD+P GGELSPS++V TPSS RR RS DGGR
Subjt:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDGGR

XP_038905322.1 uncharacterized protein LOC120091388 [Benincasa hispida]7.8e-2977.89Show/hide
Query:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDGGRF
        M P LE+D  E+FVKIAMF  VQ+LVYLILSKSSNLFS D+KLRSLSFKPARSVSIRRFLAALSD+P GGE+SP+ RV TPSS RR  S DGGRF
Subjt:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDGGRF

TrEMBL top hitse value%identityAlignment
A0A1S3CFW1 uncharacterized protein LOC1035002811.8e-2679.35Show/hide
Query:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDG
        M P  ETDAGE+FV+IAMFV VQ+LVYLILSKSSNLFS D+KLRSLSFKPARSVSIRRFLAALSD+P GGELS       PSSVRRGRS DG
Subjt:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDG

A0A218WLF6 uncharacterized protein LOC1161988357.4e-1770Show/hide
Query:  GEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVP
        G++ +K+ MFVLVQ LVYLILSKSS++FS+D+  +SLSF+P RSVSIRRF+AALSDMP+GGE SPS R P
Subjt:  GEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVP

A0A5A7UC63 Uncharacterized protein1.8e-2679.35Show/hide
Query:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDG
        M P  ETDAGE+FV+IAMFV VQ+LVYLILSKSSNLFS D+KLRSLSFKPARSVSIRRFLAALSD+P GGELS       PSSVRRGRS DG
Subjt:  MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDG

A0A6A4LYS5 Uncharacterized protein (Fragment)4.8e-1670Show/hide
Query:  LETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSP
        +ET   ++ VK+ MFVLVQ LVYLILS SS++FS D KLRSLSFKPA SVSIRR LAA+SD+P GGE SP
Subjt:  LETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSP

B9REM2 Uncharacterized protein6.3e-1666.67Show/hide
Query:  LETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVP
        +E+  G++ +K+AMF LVQ LVY+ILSKSSN+FS   K RS SFKPARSVSIRRFLAAL D+P+ GELSPS + P
Subjt:  LETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein1.3e-1354.79Show/hide
Query:  IFVKIAMFVLVQVLVYLILSKSSNLFSQDEKL-RSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSS
        + +K+++F L+Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L DMP+GGE+SPS+  P+ +S
Subjt:  IFVKIAMFVLVQVLVYLILSKSSNLFSQDEKL-RSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSS

AT2G31945.1 unknown protein9.9e-1456Show/hide
Query:  GEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKL-RSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSS
        G + +K+A+F LVQ LVYLIL KSS +F++   L R+ SF+P RSVSIRR LAAL D+P+G ++SPSS   + SS
Subjt:  GEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKL-RSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCGAATTTGGAAACCGACGCCGGCGAGATCTTCGTCAAAATCGCCATGTTCGTCTTAGTTCAGGTTCTTGTCTACTTGATCCTCTCGAAATCGTCCAATCTGTT
CTCCCAGGACGAGAAATTGAGATCTCTCAGCTTTAAACCGGCGAGATCCGTCAGTATTCGTCGGTTTCTGGCGGCGCTTTCCGATATGCCTTCCGGCGGCGAGCTTTCCC
CGTCGTCAAGAGTTCCGACTCCGTCGTCTGTTCGTCGAGGACGTTCCGGTGACGGCGGCAGGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATCAAATTAAAACCCCCCCAAATTTTATCCAAAAGACCTGGAACCTTCCTCCCATCTCCGTCGAGCTCTCTGTTCCAAACATGGCGGCCGCGGTCAAAGAACCTCCGCCA
ATACTTTCCCCCTCTATAAAACCACCTTCAAATCTCCATTTTCATCATCCAATTTCAATTCGCTCTTCTTCTTCTTCCTTCAGCGACTCAAAATTTCACCTCCTCCATCT
CAGATTCAGCCCCAAATCTCCATCATGCTGCCGAATTTGGAAACCGACGCCGGCGAGATCTTCGTCAAAATCGCCATGTTCGTCTTAGTTCAGGTTCTTGTCTACTTGAT
CCTCTCGAAATCGTCCAATCTGTTCTCCCAGGACGAGAAATTGAGATCTCTCAGCTTTAAACCGGCGAGATCCGTCAGTATTCGTCGGTTTCTGGCGGCGCTTTCCGATA
TGCCTTCCGGCGGCGAGCTTTCCCCGTCGTCAAGAGTTCCGACTCCGTCGTCTGTTCGTCGAGGACGTTCCGGTGACGGCGGCAGGTTTTAGAGAATCGAATCGAGTCCG
ATTGGGTAGCTATGTAAATTGAAAAAGTAAGTAGTGGTAATTAATGTAATTTGTGAGAATAGAGGGTTGGTTTTGTGATTTGAGATTATTTATATTTGTTGTTTTGAATG
ATTCTTTTGTTCTTTGGTAATGGAAGTTATTGGATTAGTATATTTATAAAATATTTTCGGTTTTTTTAGTATAACCGATTTATGGTTGAGAA
Protein sequenceShow/hide protein sequence
MLPNLETDAGEIFVKIAMFVLVQVLVYLILSKSSNLFSQDEKLRSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVPTPSSVRRGRSGDGGRF