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Tan0005891 (gene) of Snake gourd v1 genome

Gene IDTan0005891
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG06:51218250..51243330
RNA-Seq ExpressionTan0005891
SyntenyTan0005891
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048153.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-2055.17Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHLLAD
        DV+   + LHVP+G IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ+E+GVKM REKL +L+DGT ++K    +   FDL   H L  
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHLLAD

Query:  SLEVLIKKMSQDNKEK
         L  +I+K S  + EK
Subjt:  SLEVLIKKMSQDNKEK

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.7e-2066.28Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ+E+GVKMAREKL + +DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]3.7e-2066.28Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q E K FEPK LYNVS+ SQ+E+ +KMA EKL SL+DGT D+KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]3.4e-2167.44Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.5e-2156.9Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHLLAD
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT ++K    +   FDL   H L  
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHLLAD

Query:  SLEVLIKKMSQDNKEK
         L  +I+K S  + EK
Subjt:  SLEVLIKKMSQDNKEK

TrEMBL top hitse value%identityAlignment
A0A5A7TX19 Reverse transcriptase8.1e-2155.17Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHLLAD
        DV+   + LHVP+G IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ+E+GVKM REKL +L+DGT ++K    +   FDL   H L  
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHLLAD

Query:  SLEVLIKKMSQDNKEK
         L  +I+K S  + EK
Subjt:  SLEVLIKKMSQDNKEK

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein8.1e-2166.28Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ+E+GVKMAREKL + +DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

A0A5A7VL78 RT_RNaseH_2 domain-containing protein1.8e-2066.28Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q E K FEPK LYNVS+ SQ+E+ +KMA EKL SL+DGT D+KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

A0A5D3BWE8 F15O4.131.6e-2167.44Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein7.3e-2256.9Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHLLAD
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT ++K    +   FDL   H L  
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHLLAD

Query:  SLEVLIKKMSQDNKEK
         L  +I+K S  + EK
Subjt:  SLEVLIKKMSQDNKEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCT
CGTGAATACACAAGGAGAGACCAAGATTTTTGAGCCTAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGGGAAAAGTTGTCTA
GTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATCTCGTTGGTCGACATCTTTTGGCCGACTCTCTAGAGGTCCTTATAAAAAAAATGTCACAA
GATAATAAAGAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACA
ACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAAGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATGCCAAGAAGATTCAAGAGGCTT
TCACATTGCATCTCCAAAAGCTCGTGAATACACAAGAAGAGACCAAGATTTTTGAGCCTAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAG
ATGGCACGGGAAAAGTTGTCTAGTTTGAAAGATGACACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATGTTGAACCGATTCATTGGATTAGCCCCGATCAAGGTAA
TTCTGGAGTGAGTCGTCTTAGGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCT
CGTGAATACACAAGGAGAGACCAAGATTTTTGAGCCTAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGGGAAAAGTTGTCTA
GTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATCTCGTTGGTCGACATCTTTTGGCCGACTCTCTAGAGGTCCTTATAAAAAAAATGTCACAA
GATAATAAAGAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACA
ACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAAGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATGCCAAGAAGATTCAAGAGGCTT
TCACATTGCATCTCCAAAAGCTCGTGAATACACAAGAAGAGACCAAGATTTTTGAGCCTAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAG
ATGGCACGGGAAAAGTTGTCTAGTTTGAAAGATGACACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATGTTGAACCGATTCATTGGATTAGCCCCGATCAAGGTAA
TTCTGGAGTGAGTCGTCTTAGGATCTAG
Protein sequenceShow/hide protein sequence
MFDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKMFDLVGRHLLADSLEVLIKKMSQ
DNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNAKKIQEAFTLHLQKLVNTQEETKIFEPKILYNVSTTSQDENGVK
MAREKLSSLKDDTEDKKSVQKMFDVEPIHWISPDQGNSGVSRLRI