CuGenDBv2

Gene ID	Tan0005898
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase domain-containing protein
Genome location	LG02:23640395..23640904
RNA-Seq Expression	Tan0005898
Synteny	Tan0005898
Gene Ontology terms	GO:0090304 - nucleic acid metabolic process (biological process)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]

4.0e-44

63.25

Show/hide

Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PLTKI KQEVK    D +EA+LP+ RTKDG DPKAYKL++KAGYDFT HTEFKSL+I D +PELS TQKKLL+EG++I  SRKGLGYK+ E +RI KKGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS
         KV D NHIT+EE D++D KE   QR S+F RI P VARP V +RL  T+ E ER   V    R S
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]

4.0e-44

63.25

Show/hide

Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PLTKI KQEVK    D +EA+LP+ RTKDG DPKAYKL++KAGYDFT HTEFKSL+I D +PELS TQKKLL+EG++I  SRKGLGYK+ E +RI KKGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS
         KV D NHIT+EE D++D KE   QR S+F RI P VARP V +RL  T+ E ER   V    R S
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]

4.0e-44

63.25

Show/hide

Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PLTKI KQEVK    D +EA+LP+ RTKDG DPKAYKL++KAGYDFT HTEFKSL+I D +PELS TQKKLL+EG++I  SRKGLGYK+ E +RI KKGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS
         KV D NHIT+EE D++D KE   QR S+F RI P VARP V +RL  T+ E ER   V    R S
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]

4.0e-44

63.25

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Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PLTKI KQEVK    D +EA+LP+ RTKDG DPKAYKL++KAGYDFT HTEFKSL+I D +PELS TQKKLL+EG++I  SRKGLGYK+ E +RI KKGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS
         KV D NHIT+EE D++D KE   QR S+F RI P VARP V +RL  T+ E ER   V    R S
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]

4.0e-44

63.25

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Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PLTKI KQEVK    D +EA+LP+ RTKDG DPKAYKL++KAGYDFT HTEFKSL+I D +PELS TQKKLL+EG++I  SRKGLGYK+ E +RI KKGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS
         KV D NHIT+EE D++D KE   QR S+F RI P VARP V +RL  T+ E ER   V    R S
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UD46 Uncharacterized protein

2.2e-43

61.45

Show/hide

Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PLTKITKQE+K    D  EASLP+ RTKDG DPKAYKL++KAGYDFTTHTEFKSLKI+ E+P+LS TQKKLL+EG+ I  SRKGLGYK+ E +RI +KGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS
         KV D+NHIT++E D  +EKE  +QRTS F RI P VAR  V ++L  T+ E +     S   R S
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS

A0A5D3BSG5 Uncharacterized protein

4.1e-42

61.45

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Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PL KITKQE+K    D  +ASLP+ RTKDG DPKAYKL++KAGYDFTTHTEFKSLKI  E+P+LS TQKKLL+EG+ I  SRKGLGYK+ E +RI +KGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS
         KV D+NHITV+EVD  +E E  +QRTS F RI P VAR  V +RL  T+ E +     S   R S
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS

A0A5D3BY54 Ty3-gypsy retrotransposon protein

6.3e-43

61.68

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Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PLTKITKQE+K    D +EASLP+ RTKDG DPKAYK ++KAGYDFTTHTEFKSLKI  E+P+LS TQKKLL+EG+ I  SRKGLGYK  E +RI +KGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTST
         KV D+NHITV+EVD  +EKE  +QRTS F R+ P VAR  V +RL   + E +     S   R ST
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTST

A0A5D3C0W6 Ty3-gypsy retrotransposon protein

2.4e-42

62.05

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Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PLTKITKQE+K    D  EASLP+ RTKD  DPKAYKL++KAGYDFTTHTEFKSLKI  E+P+LS TQKKLL+EG+ I  SRKGLGYK  E +RI +KGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS
         K+ D+NHITV+EVD   EKE  +QRTS F RI P VAR  V +RL  T+ E +     S   R S
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS

A0A5D3D7W3 Uncharacterized protein

6.9e-42

61.45

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Query:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK
        PLTKITKQE+K    D  EASLP+ RTKDG DPKAYKL++KAGY+FTTHTEFKSLKI  E+P+LS TQKKLL+EG+ I  SRKGLGYK+ E +RI KKGK
Subjt:  PLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGK

Query:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS
         KV D N IT++EVD  +EKE  +QRTS F RI P VA   V +RL  T+ E +     S   R S
Subjt:  AKVADANHITVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCGCTTACGAAGATAACGAAGCAAGAGGTCAAGAAACTTGAAGATGACCGATTGGAAGCAAGTTTGCCTAAGAGTCGAACGAAAGATGGGATTGACCCTAAGGCATA
TAAACTCCTATCAAAGGCAGGATACGACTTCACAACTCACACAGAGTTCAAAAGTCTGAAGATCTTCGATGAGAAACCTGAGCTCTCATTAACTCAAAAAAAGCTTTTAA
AGGAAGGTTATACTATCCATGCGTCAAGGAAAGGACTGGGATATAAGACTCTTGAGTCGGTCCGCATAATAAAAAAAGGGAAGGCAAAGGTGGCAGACGCAAACCACATA
ACAGTGGAAGAGGTAGACGATTCAGATGAAAAGGAAAACGTTACCCAAAGGACTTCTATTTTTAGCCGCATCGGGCCGTTGGTGGCACGACCTTCAGTCCTCCAACGATT
GGGCACCACTCAAGTAGAAGAAGAGCGGTCACCTCCCGTTTCTGGTTCCACTCGAACCTCAACCTCATGA

mRNA sequence

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Protein sequence

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MPLTKITKQEVKKLEDDRLEASLPKSRTKDGIDPKAYKLLSKAGYDFTTHTEFKSLKIFDEKPELSLTQKKLLKEGYTIHASRKGLGYKTLESVRIIKKGKAKVADANHI
TVEEVDDSDEKENVTQRTSIFSRIGPLVARPSVLQRLGTTQVEEERSPPVSGSTRTSTS

Tan0005898 (gene) of Snake gourd v1 genome