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Tan0005940 (gene) of Snake gourd v1 genome

Gene IDTan0005940
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG01:104098099..104108035
RNA-Seq ExpressionTan0005940
SyntenyTan0005940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3453673.1 reverse transcriptase [Gossypium australe]6.4e-1347.19Show/hide
Query:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK
        D I  G+E  I+E     L+  F  +EI   ++E+ P+KA G DG PA+FY   W I+GED  N CL  LNK + + SINKT IVL+PK
Subjt:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK

KAA3457116.1 reverse transcriptase [Gossypium australe]8.4e-1343.96Show/hide
Query:  DMDDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK
        DM+ I+ G+   I+++  ++++  F  ++I + V+ + P+KASG DG PA+FY  FW IVG+DT   CL+ LN    ++ IN+TLIVLIPK
Subjt:  DMDDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK

KAA3467625.1 reverse transcriptase [Gossypium australe]6.4e-1344.94Show/hide
Query:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK
        D +++G+E +  E     L  PF+ +EI K + E+ P+K+ GPDG PA+FY  +W IVG D    CL  LN+R  ++ IN T IVLIPK
Subjt:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK

KAA3487748.1 reverse transcriptase [Gossypium australe]3.8e-1344.94Show/hide
Query:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK
        D +++G+E +I E     L  PF+ +EI K + ++ P+K+ GPDG PA+FY  +W IVG+D    CL  LN+R  ++ IN T IVLIPK
Subjt:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK

XP_012435028.1 PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]6.4e-1348.28Show/hide
Query:  IMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK
        I+ G+E  I E     L+  +  +EI + +SE+ P+KA G DG PA+FY   W IVGED  N CL  LN+ + + SINKT IVLIPK
Subjt:  IMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK

TrEMBL top hitse value%identityAlignment
A0A5B6U8V5 Reverse transcriptase3.1e-1347.19Show/hide
Query:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK
        D I  G+E  I+E     L+  F  +EI   ++E+ P+KA G DG PA+FY   W I+GED  N CL  LNK + + SINKT IVL+PK
Subjt:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK

A0A5B6UJR2 Reverse transcriptase4.1e-1343.96Show/hide
Query:  DMDDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK
        DM+ I+ G+   I+++  ++++  F  ++I + V+ + P+KASG DG PA+FY  FW IVG+DT   CL+ LN    ++ IN+TLIVLIPK
Subjt:  DMDDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK

A0A5B6VEN5 Reverse transcriptase3.1e-1344.94Show/hide
Query:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK
        D +++G+E +  E     L  PF+ +EI K + E+ P+K+ GPDG PA+FY  +W IVG D    CL  LN+R  ++ IN T IVLIPK
Subjt:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK

A0A5B6X1R5 Reverse transcriptase1.8e-1344.94Show/hide
Query:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK
        D +++G+E +I E     L  PF+ +EI K + ++ P+K+ GPDG PA+FY  +W IVG+D    CL  LN+R  ++ IN T IVLIPK
Subjt:  DDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPK

A0A7N2LT95 Reverse transcriptase domain-containing protein6.9e-1340.4Show/hide
Query:  TSLLEDMDDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPKCND
        TS   D D I+DG++  + E  R  L RP+ + +++  + E++P KA GPDG P +FY  +W  VG D     L +LN   ++ SIN T I LIPK N+
Subjt:  TSLLEDMDDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGEDTKNICLDNLNKRVVMDSINKTLIVLIPKCND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAATGAGGGAGAGACGAAGGAAGAGGAAAAGTTAGCCCTCACCATGGGGCAAAGAGGAGAGAAGACGACGGACAGTGTGGCTGGAGAAGGTGCCGGCGAACAAGG
GAATATCCTAACGGGCAAAAACCATGGTGGTGAGATGACAGATGTGATGGTTCAGGGCAAAGACGGTCTAACTTTCGCATGCGGTGGTGGGGCCCAACCAGCTGAAGTCG
ACGTGATTAAGAAAGGAAAAGATGTTGGAGTGCCAGGATCGTGTGATGGGTTGGCTAATGGGCTGAAGCAATTTGGCCAAAATCTGGTTATTGGGGAAGGCCTTGACTCG
GGAAGGACGGAAAAGGGTTGGGCTAAAACTGGGCCCATAACCAATACAAATAAGGGATGCGATACTGCTGCAAAGAAGGCCATGAAAAGTGAAGTTGTTGCTCACACAAG
CAAATCTAAAAGAGGTGGCACCAGTTTACTAGAGGATATGGATGATATTATGGATGGTTTAGAGGAGAGAATCAATGAGAACCATCGTAGAATTCTTAGAAGACCTTTTG
AAGCCAAAGAGATTGAGAAGGTTGTCAGCGAGCTGAGTCCTTCAAAAGCCTCGGGCCCTGACGGTTGCCCCGCCATGTTTTACCACGGCTTCTGGGACATTGTGGGCGAA
GATACTAAAAATATATGTTTGGATAACCTGAACAAAAGAGTGGTTATGGATAGTATTAATAAAACCTTGATAGTCCTAATTCCCAAGTGTAACGATGGGAACTGGAAGGA
AAATGAGGGCAGAGTTGGGCCCCAAGATGTCGACGATATCATGAACACTCTATTAGGTCCTCGAGGGTCTAAAGATGAAATTATTTGGGGTAAGGACCCAAAAGAAGCTA
TTTTCAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAATGAGGGAGAGACGAAGGAAGAGGAAAAGTTAGCCCTCACCATGGGGCAAAGAGGAGAGAAGACGACGGACAGTGTGGCTGGAGAAGGTGCCGGCGAACAAGG
GAATATCCTAACGGGCAAAAACCATGGTGGTGAGATGACAGATGTGATGGTTCAGGGCAAAGACGGTCTAACTTTCGCATGCGGTGGTGGGGCCCAACCAGCTGAAGTCG
ACGTGATTAAGAAAGGAAAAGATGTTGGAGTGCCAGGATCGTGTGATGGGTTGGCTAATGGGCTGAAGCAATTTGGCCAAAATCTGGTTATTGGGGAAGGCCTTGACTCG
GGAAGGACGGAAAAGGGTTGGGCTAAAACTGGGCCCATAACCAATACAAATAAGGGATGCGATACTGCTGCAAAGAAGGCCATGAAAAGTGAAGTTGTTGCTCACACAAG
CAAATCTAAAAGAGGTGGCACCAGTTTACTAGAGGATATGGATGATATTATGGATGGTTTAGAGGAGAGAATCAATGAGAACCATCGTAGAATTCTTAGAAGACCTTTTG
AAGCCAAAGAGATTGAGAAGGTTGTCAGCGAGCTGAGTCCTTCAAAAGCCTCGGGCCCTGACGGTTGCCCCGCCATGTTTTACCACGGCTTCTGGGACATTGTGGGCGAA
GATACTAAAAATATATGTTTGGATAACCTGAACAAAAGAGTGGTTATGGATAGTATTAATAAAACCTTGATAGTCCTAATTCCCAAGTGTAACGATGGGAACTGGAAGGA
AAATGAGGGCAGAGTTGGGCCCCAAGATGTCGACGATATCATGAACACTCTATTAGGTCCTCGAGGGTCTAAAGATGAAATTATTTGGGGTAAGGACCCAAAAGAAGCTA
TTTTCAGTTAA
Protein sequenceShow/hide protein sequence
MQNEGETKEEEKLALTMGQRGEKTTDSVAGEGAGEQGNILTGKNHGGEMTDVMVQGKDGLTFACGGGAQPAEVDVIKKGKDVGVPGSCDGLANGLKQFGQNLVIGEGLDS
GRTEKGWAKTGPITNTNKGCDTAAKKAMKSEVVAHTSKSKRGGTSLLEDMDDIMDGLEERINENHRRILRRPFEAKEIEKVVSELSPSKASGPDGCPAMFYHGFWDIVGE
DTKNICLDNLNKRVVMDSINKTLIVLIPKCNDGNWKENEGRVGPQDVDDIMNTLLGPRGSKDEIIWGKDPKEAIFS