CuGenDBv2

Gene ID	Tan0005941
Organism	Trichosanthes anguina (Snake gourd v1)
Description	methyl-CpG-binding domain-containing protein 5-like
Genome location	LG01:30798620..30801326
RNA-Seq Expression	Tan0005941
Synteny	Tan0005941
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR001739 - Methyl-CpG DNA binding IPR016177 - DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7036930.1 Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-109

82.82

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSASGTSFPDPDWPRQ  TR DLPS  H PPDPLLS+GSFIDSS  RCGTLPSSP   R  D   R  PDTSAT RSPLP  PLN   LPPD P PGNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        S + KK SASR TDASPK + SERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRKKSLDGN  SADG EEPKSKK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVPESTKREWV AFQ+LGRSKV
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

XP_022948610.1 methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moschata]

4.0e-112

83.21

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSASGTSFPDPDWPRQ  TR DLPS  H PPDPLLS+GSFIDSS  RCGTLPSSP   R  D   R  PDTSAT RSPLPA PLN   LPPD P PGNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        S + KK SASR TDASPK + SERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRKKSLDGNV SADG EEPKSKK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVPESTKREWV AFQ+LGRSK+
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

XP_022948611.1 methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moschata]

3.7e-110

82.82

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSASGTSFPDPDWPRQ  TR DLPS  H PPDPLLS+GSFIDSS  RCGTLPSSP   R  D   R  PDTSAT RSPLPA PLN   LPPD P PGNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        S + KK SASR TDASPK + SERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRKKSLDGN  SADG EEPKSKK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVPESTKREWV AFQ+LGRSK+
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

XP_022998335.1 methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima]

4.4e-111

82.82

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSASGTSFPDPDWPRQ  TR DLPS  H PPDPLLS+GSFIDSS  RCGTLPSSP   R  D   RK PDTSAT RSPLPA PLN   L PD P PGNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        S + KK SASR TDASPK + S+RPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRKKSLDGN  SADG EEPKSKK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVPESTKREWV AFQ+LGRSKV
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

XP_023523162.1 methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo]

7.5e-111

83.59

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSASGTSFPDPDWPRQ  TR DLPS  H PPDPLLS+GSFIDSS  RCGTLPSSP   R  D   RK PDTSAT RSPLPA PLN   LPPD P PGNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        S + KK SASR TDASPK + SERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRKKSLDGN  SADG EEPKSKK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVPESTKREWV AFQ+LGRSKV
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1G9P7 methyl-CpG-binding domain-containing protein 5-like isoform X2

1.8e-110

82.82

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSASGTSFPDPDWPRQ  TR DLPS  H PPDPLLS+GSFIDSS  RCGTLPSSP   R  D   R  PDTSAT RSPLPA PLN   LPPD P PGNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        S + KK SASR TDASPK + SERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRKKSLDGN  SADG EEPKSKK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVPESTKREWV AFQ+LGRSK+
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

A0A6J1GAC7 methyl-CpG-binding domain-containing protein 5-like isoform X1

1.9e-112

83.21

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSASGTSFPDPDWPRQ  TR DLPS  H PPDPLLS+GSFIDSS  RCGTLPSSP   R  D   R  PDTSAT RSPLPA PLN   LPPD P PGNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        S + KK SASR TDASPK + SERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRKKSLDGNV SADG EEPKSKK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVPESTKREWV AFQ+LGRSK+
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

A0A6J1HLU8 methyl-CpG-binding domain-containing protein 5-like

1.2e-101

75.95

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLP-SSHLPPDPLLSAGSFIDSSAVRCGTLPSSP-RSQD-----RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSA GTS  DPDWPR+DPTR +LP S+HLPPDPLL AGSFIDSSA RCGTLPSSP  S+D     RK  +TS+T RSP  A PLN           GNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLP-SSHLPPDPLLSAGSFIDSSAVRCGTLPSSP-RSQD-----RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        SP+ KK S SR TDASPK +SSE+PNWLPPGW++EDRVR SGATAGTVDKYYFDP+SGRRFRSKIEVLYFLETGTLRKRKKSLDGN  SADG EEPK+KK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SS+NAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVP+STKREWV AF++L RSKV
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

A0A6J1K9Z4 methyl-CpG-binding domain-containing protein 5-like isoform X2

6.9e-110

82.82

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSASGTSFPDPDWPRQ  TR DLPS  H PPDPLLS+GSFIDSS  RCGTLPSSP   R  D   RK PDTSAT RSPLPA PLN   L PD P PGNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        S + KK SASR TDASPK + S+RPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRKKSLDGN  SADG EEPKSKK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVPESTKREWV AFQ+LGRSKV
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

A0A6J1KC76 methyl-CpG-binding domain-containing protein 5-like isoform X1

2.1e-111

82.82

Show/hide

Query:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA
        MSASGTSFPDPDWPRQ  TR DLPS  H PPDPLLS+GSFIDSS  RCGTLPSSP   R  D   RK PDTSAT RSPLPA PLN   L PD P PGNG 
Subjt:  MSASGTSFPDPDWPRQDPTRSDLPS-SHLPPDPLLSAGSFIDSSAVRCGTLPSSP---RSQD---RKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGA

Query:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK
        S + KK SASR TDASPK + S+RPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRKKSLDGN  SADG EEPKSKK
Subjt:  SPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKK

Query:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV
        SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTP+I+NEKVPESTKREWV AFQ+LGRSKV
Subjt:  SSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

SwissProt top hits

e value

%identity

Alignment

Q9LTJ1 Methyl-CpG-binding domain-containing protein 6

3.3e-32

37.76

Show/hide

Query:  SDLPSSHLPPDPLLSAGSFIDSSAVRCGTLPSSPRSQDRKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGASPSAKKASASRA---------TDASPK
        SD  +   PPDPLL++G+FI S+    GTL            D+SA RR      P+ G          G G S S +      A         T++  +
Subjt:  SDLPSSHLPPDPLLSAGSFIDSSAVRCGTLPSSPRSQDRKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGASPSAKKASASRA---------TDASPK

Query:  PSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKKSSSNA-----KSAPLNFD
          ++   NWLPPGW VED++R SGATAG+VDKYY++P +GR+FRS+ EVLY+LE GT ++  K  +    + D FE   S + +  A        PL+FD
Subjt:  PSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKKSSSNA-----KSAPLNFD

Query:  FFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAF
        F N P+KV W + +  +E W P I + KV +S +R+W  AF
Subjt:  FFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAF

Q9SNC0 Methyl-CpG-binding domain-containing protein 5

5.7e-29

43.6

Show/hide

Query:  PPPGNGASPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRK-KSLDGNVTSADG
        PPP N A+P   K S  RAT            NWLPP W  E RVR SG  AGTVDK+Y++PI+GR+FRSK EVLY+LE GT +K+  K+ +   + ++ 
Subjt:  PPPGNGASPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRK-KSLDGNVTSADG

Query:  FE-------EPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVL
         E       + KS K  +     PLNFDF NVPEKV W   + S+E W P+I + K+ ES  ++W   F ++
Subjt:  FE-------EPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVL

Arabidopsis top hits

e value

%identity

Alignment

AT3G46580.1 methyl-CPG-binding domain protein 5

4.1e-30

43.6

Show/hide

Query:  PPPGNGASPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRK-KSLDGNVTSADG
        PPP N A+P   K S  RAT            NWLPP W  E RVR SG  AGTVDK+Y++PI+GR+FRSK EVLY+LE GT +K+  K+ +   + ++ 
Subjt:  PPPGNGASPSAKKASASRATDASPKPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRK-KSLDGNVTSADG

Query:  FE-------EPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVL
         E       + KS K  +     PLNFDF NVPEKV W   + S+E W P+I + K+ ES  ++W   F ++
Subjt:  FE-------EPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAFQVL

AT5G59380.1 methyl-CPG-binding domain 6

2.3e-33

37.76

Show/hide

Query:  SDLPSSHLPPDPLLSAGSFIDSSAVRCGTLPSSPRSQDRKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGASPSAKKASASRA---------TDASPK
        SD  +   PPDPLL++G+FI S+    GTL            D+SA RR      P+ G          G G S S +      A         T++  +
Subjt:  SDLPSSHLPPDPLLSAGSFIDSSAVRCGTLPSSPRSQDRKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGASPSAKKASASRA---------TDASPK

Query:  PSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKKSSSNA-----KSAPLNFD
          ++   NWLPPGW VED++R SGATAG+VDKYY++P +GR+FRS+ EVLY+LE GT ++  K  +    + D FE   S + +  A        PL+FD
Subjt:  PSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKKSSSNA-----KSAPLNFD

Query:  FFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAF
        F N P+KV W + +  +E W P I + KV +S +R+W  AF
Subjt:  FFNVPEKVEWVLTDPSQETWTPYIDNEKVPESTKREWVGAF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGACCCGACCCGATCCGACTTACCTTCCTCCCACCTCCCCCCGGACCCTCTCCTCTCCGCCGG
CTCCTTCATCGACTCCTCCGCCGTCCGATGCGGAACCCTACCTTCTTCTCCCCGCTCCCAAGATCGCAAGAACCCCGACACCTCCGCTACTCGCCGATCTCCATTGCCTG
CCCAGCCTCTCAACGGTAACAACCTCCCTCCCGACCCTCCTCCTCCTGGAAATGGAGCTTCTCCGTCAGCTAAGAAGGCCTCCGCCTCCAGAGCTACCGACGCCTCCCCG
AAACCTTCCTCCTCGGAGAGGCCTAATTGGCTACCGCCGGGCTGGGTGGTGGAAGATAGAGTTCGCGCCTCCGGTGCTACAGCTGGAACCGTTGATAAGTACTACTTTGA
CCCAATCTCAGGCCGTCGCTTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACGTTAAGGAAACGGAAGAAATCATTAGATGGTAATGTGACGTCTGCTG
ATGGCTTCGAAGAACCCAAGAGCAAGAAATCCTCAAGCAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGAC
CCTTCTCAGGAGACTTGGACGCCATATATCGACAACGAGAAAGTACCTGAATCTACGAAACGCGAATGGGTGGGAGCCTTTCAAGTTCTCGGCCGATCGAAAGTTTGA

mRNA sequence

Show/hide mRNA sequence

CGACAATAAATAATCTCCCCCGTGTTCTAACGTCCTTTTTCCGTCTTCTCTTTCTCTTCTTCTTCCTCTCTCTCCCCACCCACATGTCTGCTTCTGGAACTTCGTTTCCG
GACCCCGACTGGCCCCGTCAAGACCCGACCCGATCCGACTTACCTTCCTCCCACCTCCCCCCGGACCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCGCCGTCCG
ATGCGGAACCCTACCTTCTTCTCCCCGCTCCCAAGATCGCAAGAACCCCGACACCTCCGCTACTCGCCGATCTCCATTGCCTGCCCAGCCTCTCAACGGTAACAACCTCC
CTCCCGACCCTCCTCCTCCTGGAAATGGAGCTTCTCCGTCAGCTAAGAAGGCCTCCGCCTCCAGAGCTACCGACGCCTCCCCGAAACCTTCCTCCTCGGAGAGGCCTAAT
TGGCTACCGCCGGGCTGGGTGGTGGAAGATAGAGTTCGCGCCTCCGGTGCTACAGCTGGAACCGTTGATAAGTACTACTTTGACCCAATCTCAGGCCGTCGCTTCCGGTC
TAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACGTTAAGGAAACGGAAGAAATCATTAGATGGTAATGTGACGTCTGCTGATGGCTTCGAAGAACCCAAGAGCAAGA
AATCCTCAAGCAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGACTTGGACGCCATAT
ATCGACAACGAGAAAGTACCTGAATCTACGAAACGCGAATGGGTGGGAGCCTTTCAAGTTCTCGGCCGATCGAAAGTTTGAAGTTTGAAGGCAACTTCAACCCTTTTGGA
CATTTTTTTGGGACACCCATCCAGGCAAGAACCATCCTCCCTCCCTCCCTCTAATGGCTTCCCATCTGCAATTCTTTTGGTCTTTTTTCGAGCCAGTGAGGTTGAGGGGG
AAGTGTTGTGAAAACCAGATTTTGGTTAGGAAAGATTACTGCAAAAAACCATGACTCTTATCTAACTGACTATGTCTTGGACTGTGGAAGAAGTGATCAATTTATGTAGA
TGAGGGCTGCTCAGTTCACATTCTGAATCAAATGTATTTGAATGAGGGGATAGTTAATTTTGATTCAATGGTGTCTTGCTCTTCACTTTGATTATAGATCTGTATTTTTT
TTTTTTTTTGTGATTCAAAATTGATATTTTTGTGGAATACTGATGTTGCATGGGATCTTGTCTATGAAATGAGGAG

Protein sequence

Show/hide protein sequence

MSASGTSFPDPDWPRQDPTRSDLPSSHLPPDPLLSAGSFIDSSAVRCGTLPSSPRSQDRKNPDTSATRRSPLPAQPLNGNNLPPDPPPPGNGASPSAKKASASRATDASP
KPSSSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPISGRRFRSKIEVLYFLETGTLRKRKKSLDGNVTSADGFEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTD
PSQETWTPYIDNEKVPESTKREWVGAFQVLGRSKV

Tan0005941 (gene) of Snake gourd v1 genome