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Tan0005987 (gene) of Snake gourd v1 genome

Gene IDTan0005987
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionARM repeat superfamily protein
Genome locationLG03:40276027..40276974
RNA-Seq ExpressionTan0005987
SyntenyTan0005987
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603255.1 hypothetical protein SDJN03_03864, partial [Cucurbita argyrosperma subsp. sororia]2.5e-1178.85Show/hide
Query:  ILADPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV
        IL  PSLVLPSLV L+YSSND+VLASA EAL+GVLK HNQNI  IF+LLDCV
Subjt:  ILADPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV

XP_022151623.1 uncharacterized protein LOC111019538 [Momordica charantia]1.1e-1491.84Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV
        DPSLVLPSLV L+YSSNDRVLASAGEALIG+LKRHNQNIE IFMLLDCV
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV

XP_022967683.1 uncharacterized protein LOC111467138 [Cucurbita maxima]1.9e-1181.63Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV
        DPSLVLPSLV L+YSSND+VLASA EAL+GVLK HNQNI  IF+LLDCV
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV

XP_023543534.1 uncharacterized protein LOC111803391 isoform X2 [Cucurbita pepo subsp. pepo]7.3e-1179.59Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV
        DPSLVLPSLV L+YSSND+VLASA EAL+GVLK HNQNI  I +LLDCV
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV

XP_023543535.1 uncharacterized protein LOC111803391 isoform X3 [Cucurbita pepo subsp. pepo]7.3e-1179.59Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV
        DPSLVLPSLV L+YSSND+VLASA EAL+GVLK HNQNI  I +LLDCV
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV

TrEMBL top hitse value%identityAlignment
A0A5A7UYA3 Putative ARM repeat superfamily protein2.5e-0975.51Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV
        +P+L LPSLV L+Y SND VLASA EALIGVLK HNQNI  I MLLDCV
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV

A0A5C7IMP7 Uncharacterized protein6.7e-1066.67Show/hide
Query:  SNIL--ADPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCVRYMN
        SN+L   DPSLVLP+LV LIYSS+++V +SA EA IGVLK HNQ  EVI MLLDCV  +N
Subjt:  SNIL--ADPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCVRYMN

A0A6J1DCN8 uncharacterized protein LOC1110195385.3e-1591.84Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV
        DPSLVLPSLV L+YSSNDRVLASAGEALIG+LKRHNQNIE IFMLLDCV
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV

A0A6J1EPJ3 uncharacterized protein LOC1114354676.0e-1179.59Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV
        DPSLVLPSLV L+YSSND+ LASA EAL+GVLK HNQNI  IF+LLDCV
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV

A0A6J1HVT8 uncharacterized protein LOC1114671389.3e-1281.63Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV
        DPSLVLPSLV L+YSSND+VLASA EAL+GVLK HNQNI  IF+LLDCV
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G57570.1 ARM repeat superfamily protein1.4e-0756.52Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLL
        +PS VLP+LV+LIY+ N +V +SA E L+GVLK H ++ +VI MLL
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLL

AT3G57570.2 ARM repeat superfamily protein1.4e-0756.52Show/hide
Query:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLL
        +PS VLP+LV+LIY+ N +V +SA E L+GVLK H ++ +VI MLL
Subjt:  DPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATTCCTGCGACATGTAGACTGTGTAGACTGTTTTCCTGTCAATGGCTTCTACCTTCTTCCACATTCAGGCCTTCCCATACAACATCTCTTGCCATTGTTTCAAA
CATTTTAGCCGATCCTTCTTTGGTTTTACCTTCTTTAGTACATCTTATCTACTCATCAAATGATAGAGTTCTAGCTTCTGCTGGTGAGGCTCTCATTGGGGTGCTCAAAC
GTCATAATCAGAACATTGAAGTGATTTTTATGCTACTTGACTGTGTTAGATACATGAACTTTTTATTCATTTGTTATGAACTTATCGGTTGTTGTTATGAACTATCGGTT
GTTAAGATCAAACTGGAAGAATCATTTTCTTTGTTGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATTCCTGCGACATGTAGACTGTGTAGACTGTTTTCCTGTCAATGGCTTCTACCTTCTTCCACATTCAGGCCTTCCCATACAACATCTCTTGCCATTGTTTCAAA
CATTTTAGCCGATCCTTCTTTGGTTTTACCTTCTTTAGTACATCTTATCTACTCATCAAATGATAGAGTTCTAGCTTCTGCTGGTGAGGCTCTCATTGGGGTGCTCAAAC
GTCATAATCAGAACATTGAAGTGATTTTTATGCTACTTGACTGTGTTAGATACATGAACTTTTTATTCATTTGTTATGAACTTATCGGTTGTTGTTATGAACTATCGGTT
GTTAAGATCAAACTGGAAGAATCATTTTCTTTGTTGATGTAA
Protein sequenceShow/hide protein sequence
MPIPATCRLCRLFSCQWLLPSSTFRPSHTTSLAIVSNILADPSLVLPSLVHLIYSSNDRVLASAGEALIGVLKRHNQNIEVIFMLLDCVRYMNFLFICYELIGCCYELSV
VKIKLEESFSLLM