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Tan0005991 (gene) of Snake gourd v1 genome

Gene IDTan0005991
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 11-like
Genome locationLG11:9111022..9114026
RNA-Seq ExpressionTan0005991
SyntenyTan0005991
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0001055 - RNA polymerase II activity (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR036603 - RNA polymerase, RBP11-like subunit
IPR037685 - RNA polymerase RBP11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593293.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia]2.9e-5492.24Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFA YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEG  SRFSRTY
Subjt:  LKYELEGEISRFSRTY
XP_004135939.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus]4.1e-5695.69Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFAGYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEGEISRFSR Y
Subjt:  LKYELEGEISRFSRTY
XP_008461312.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo]2.0e-5594.83Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFAGYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELE EISRFSR Y
Subjt:  LKYELEGEISRFSRTY
XP_022150995.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia]2.3e-5492.24Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFA YQLPHPLKYRIL+RIHTASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LK+ELE E+SRFSR Y
Subjt:  LKYELEGEISRFSRTY
XP_038899336.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]1.6e-5594.83Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFILEREDHT+G+ILRMQLHRDDNVLFAGYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEGEISRFSR Y
Subjt:  LKYELEGEISRFSRTY
TrEMBL top hitse value%identityAlignment
A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like9.9e-5694.83Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFAGYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELE EISRFSR Y
Subjt:  LKYELEGEISRFSRTY
A0A6J1DA06 DNA-directed RNA polymerases II, IV and V subunit 11-like1.1e-5492.24Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFA YQLPHPLKYRIL+RIHTASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LK+ELE E+SRFSR Y
Subjt:  LKYELEGEISRFSRTY
A0A6J1H6T9 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X21.3e-5291.38Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFA YQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEG  SRFSRTY
Subjt:  LKYELEGEISRFSRTY
A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X11.4e-5492.24Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFA YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEG  SRFSRTY
Subjt:  LKYELEGEISRFSRTY
A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X14.2e-5491.38Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSY RDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFA YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LKYELEG  SRFSR+Y
Subjt:  LKYELEGEISRFSRTY
SwissProt top hitse value%identityAlignment
O08740 DNA-directed RNA polymerase II subunit RPB113.9e-2546.79Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+ T    SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEI
        L+    G I
Subjt:  LKYELEGEI
P52435 DNA-directed RNA polymerase II subunit RPB11-a2.5e-2448.04Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+ T    SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LK
        L+
Subjt:  LK
Q32P79 DNA-directed RNA polymerase II subunit RPB112.5e-2448.04Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+ T    SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LK
        L+
Subjt:  LK
Q38859 DNA-directed RNA polymerases II, IV and V subunit 116.0e-5078.45Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P+RYERFVVPEG KKVSY RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFAGYQLPHPLKY+I+VRIHT SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LK + E E+++FS  +
Subjt:  LKYELEGEISRFSRTY
Q86JJ5 DNA-directed RNA polymerase II subunit rpb111.3e-2548.04Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN PDR+E FV+P+GAKKV+ VRDTKI NA+ F + +EDHT+GN++RMQL  D +++FAGY++PHPL++ + +RI T + ++P++   +++  L +E   
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LK
        L+
Subjt:  LK
Arabidopsis top hitse value%identityAlignment
AT3G52090.1 DNA-directed RNA polymerase, RBP11-like4.2e-5178.45Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P+RYERFVVPEG KKVSY RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFAGYQLPHPLKY+I+VRIHT SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKYELEGEISRFSRTY
        LK + E E+++FS  +
Subjt:  LKYELEGEISRFSRTY
AT3G52090.2 DNA-directed RNA polymerase, RBP11-like2.4e-4662.33Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR--------------------------
        MN P+RYERFVVPEG KKVSY RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFAGYQLPHPLKY+I+VR                          
Subjt:  MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR--------------------------

Query:  ----IHTASQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY
            IHT SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Subjt:  ----IHTASQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCTGAGGGCGCCAAGAAGGTTTCATATGTGAGAGACACGAAGATCATGAACGCGGCGACCTTTATATTGGAGAG
AGAGGATCATACCGTTGGAAACATCCTCCGCATGCAACTTCACAGAGATGATAATGTGTTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTCC
GGATACACACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATACGAACTCGAGGGTGAGATTTCT
AGGTTCTCGAGGACCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCTGAGGGCGCCAAGAAGGTTTCATATGTGAGAGACACGAAGATCATGAACGCGGCGACCTTTATATTGGAGAG
AGAGGATCATACCGTTGGAAACATCCTCCGCATGCAACTTCACAGAGATGATAATGTGTTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTCC
GGATACACACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATACGAACTCGAGGGTGAGATTTCT
AGGTTCTCGAGGACCTACTAG
Protein sequenceShow/hide protein sequence
MNVPDRYERFVVPEGAKKVSYVRDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKYELEGEIS
RFSRTY