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Tan0005999 (gene) of Snake gourd v1 genome

Gene IDTan0005999
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:21084658..21091714
RNA-Seq ExpressionTan0005999
SyntenyTan0005999
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-0678.12Show/hide
Query:  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP
        ESCHH+  DD GRIR GRRILPK NL+GDLVP
Subjt:  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]7.5e-0678.12Show/hide
Query:  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP
        ESCHH+  DD GRIR GRRILPK NL+GDLVP
Subjt:  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP
TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase3.6e-0678.12Show/hide
Query:  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP
        ESCHH+  DD GRIR GRRILPK NL+GDLVP
Subjt:  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP
A0A5D3DSY7 Putative Retrotransposon protein3.6e-0678.12Show/hide
Query:  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP
        ESCHH+  DD GRIR GRRILPK NL+GDLVP
Subjt:  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACTGTGTGCACACATGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATACTACGCAGACAAGCGACGAAGAGA
CTTAGAATTCCAGGTCGGAGATCAAGAGTCATGCCACCACATACTAGTAGACGACGTAGGCAGGATCAGGGCGGGACGCAGGATCCTTCCCAAGGCCAATTTGAGAGGGG
ATCTAGTGCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACTGTGTGCACACATGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATACTACGCAGACAAGCGACGAAGAGA
CTTAGAATTCCAGGTCGGAGATCAAGAGTCATGCCACCACATACTAGTAGACGACGTAGGCAGGATCAGGGCGGGACGCAGGATCCTTCCCAAGGCCAATTTGAGAGGGG
ATCTAGTGCCCTGA
Protein sequenceShow/hide protein sequence
MTETLSPRLYGTVCTHVEIELPVPDNLPYYADKRRRDLEFQVGDQESCHHILVDDVGRIRAGRRILPKANLRGDLVP