; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0006024 (gene) of Snake gourd v1 genome

Gene IDTan0006024
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S Ribosomal protein
Genome locationLG03:78839205..78843763
RNA-Seq ExpressionTan0006024
SyntenyTan0006024
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR011719 - Conserved hypothetical protein CHP02058
IPR037103 - Tubulin/FtsZ-like, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439752.1 PREDICTED: uncharacterized protein LOC103484457 isoform X1 [Cucumis melo]7.6e-8485.57Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MT S +LNL    +TD RFRSYP SN+ S S  +LIC    PRISRL+KVTA SSMEVEQGG+SAPV ST PPMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_022142213.1 uncharacterized protein LOC111012382 isoform X1 [Momordica charantia]1.7e-8382.56Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSN-NCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRA
        MT S ++N+P PW  +LRFRSY HSN N S SSA+ +C    P ISRL+K TA SSMEVE+GG+SA V STA PMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSN-NCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVPQ+LQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_022925764.1 uncharacterized protein LOC111433074 [Cucurbita moschata]1.5e-8789.18Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MT SR+LNL  P VTDLRFRSYP SN  S SSA+LIC    P ISRLVKVTA SSMEVEQGGKSAPV ST PPMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKI+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_023544561.1 uncharacterized protein LOC111804102 [Cucurbita pepo subsp. pepo]9.6e-8788.66Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MT S +LNL  P VTDLRFRSYP SN  S SSA+LIC    PRISRLVKVTA SSMEVEQGGKSAPV ST PPMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGVTF EMKLQIKLGVP SLQQSLD+EKVKSVFPYGKI+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_038883708.1 uncharacterized protein LOC120074614 isoform X1 [Benincasa hispida]2.2e-8386.6Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MT S +LN     VTD RFRSY  SN  S  SA+LIC    PRISRLVKVTA SSMEVEQGGKSAP  ST PPMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

TrEMBL top hitse value%identityAlignment
A0A0A0KNJ4 Uncharacterized protein1.1e-8385.05Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MT+S +LNL    +TD RFRSY  SN+ S SS +LIC    PRISRL+KVTA SSMEVEQGG+SAPV ST PPMKLLFVEMGVGYDQHGQD+TAAAMRAC
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A1S3B079 uncharacterized protein LOC103484457 isoform X13.7e-8485.57Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MT S +LNL    +TD RFRSYP SN+ S S  +LIC    PRISRL+KVTA SSMEVEQGG+SAPV ST PPMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1CMQ6 uncharacterized protein LOC111012382 isoform X18.2e-8482.56Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSN-NCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRA
        MT S ++N+P PW  +LRFRSY HSN N S SSA+ +C    P ISRL+K TA SSMEVE+GG+SA V STA PMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSN-NCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVPQ+LQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1ED44 uncharacterized protein LOC1114330747.2e-8889.18Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MT SR+LNL  P VTDLRFRSYP SN  S SSA+LIC    P ISRLVKVTA SSMEVEQGGKSAPV ST PPMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKI+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1ILT2 uncharacterized protein LOC1114776236.3e-7672.37Show/hide
Query:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MT S +LNL  P VTDLRFRSYP SN  S SSA+LIC    PRISRLVKVTA SSMEVEQGGKSAPV STA PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLIC----PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDV---------EKVKSVF-------------------------PYGKILNVEVVDGGLI
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD           K + ++                         P GKI+NV+VVDGGLI
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDV---------EKVKSVF-------------------------PYGKILNVEVVDGGLI

Query:  CSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CSSGVHVEEMGDKNDDCYIVNAAVYVGY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29040.1 unknown protein3.7e-6075.16Show/hide
Query:  PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL
        P+ISR +KV A S+ME      +  V +    MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SL Q L
Subjt:  PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL

Query:  DVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        D++KVKS+FPYGKI+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  DVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

AT1G29040.2 unknown protein1.7e-4966.67Show/hide
Query:  PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL
        P+ISR +KV A S+ME      +  V +    MKLLFVEMGVGYDQHGQD+T+AAM+AC               SIPGV+FGEMKLQIKLGVP SL Q L
Subjt:  PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL

Query:  DVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        D++KVKS+FPYGKI+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  DVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

AT1G29040.3 unknown protein3.2e-1964Show/hide
Query:  PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGS
        P+ISR +KV A S+ME      +  V +    MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNSIPAFRRG+
Subjt:  PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGS

AT1G29040.4 unknown protein3.7e-6075.16Show/hide
Query:  PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL
        P+ISR +KV A S+ME      +  V +    MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SL Q L
Subjt:  PRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL

Query:  DVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        D++KVKS+FPYGKI+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  DVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGCCTCCAGAATCCTAAATCTGCCAATTCCTTGGGTAACTGATCTTAGGTTTCGTTCTTACCCTCATTCCAATAACTGTTCTTTATCATCTGCGTATTTGATCTG
CCCTCGAATTTCTCGCCTTGTCAAAGTTACTGCTACGTCGTCCATGGAGGTCGAGCAAGGCGGAAAATCAGCTCCAGTTAGCAGCACAGCTCCGCCCATGAAGCTCTTGT
TCGTCGAGATGGGTGTTGGCTACGATCAACATGGCCAAGATATCACGGCGGCTGCAATGCGAGCCTGCAGGGATGCCATATCTTCCAATTCGATTCCAGCATTCCGTAGA
GGTTCCATTCCTGGAGTTACATTTGGAGAAATGAAACTACAAATCAAACTTGGAGTTCCACAGTCTCTTCAACAATCCTTGGATGTTGAAAAAGTCAAGTCCGTCTTCCC
ATATGGAAAGATTCTGAATGTTGAGGTCGTCGATGGTGGCTTAATATGCTCCAGCGGTGTGCATGTAGAAGAAATGGGAGACAAAAATGATGACTGTTACATAGTAAATG
CTGCTGTATATGTTGGCTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGCCTCCAGAATCCTAAATCTGCCAATTCCTTGGGTAACTGATCTTAGGTTTCGTTCTTACCCTCATTCCAATAACTGTTCTTTATCATCTGCGTATTTGATCTG
CCCTCGAATTTCTCGCCTTGTCAAAGTTACTGCTACGTCGTCCATGGAGGTCGAGCAAGGCGGAAAATCAGCTCCAGTTAGCAGCACAGCTCCGCCCATGAAGCTCTTGT
TCGTCGAGATGGGTGTTGGCTACGATCAACATGGCCAAGATATCACGGCGGCTGCAATGCGAGCCTGCAGGGATGCCATATCTTCCAATTCGATTCCAGCATTCCGTAGA
GGTTCCATTCCTGGAGTTACATTTGGAGAAATGAAACTACAAATCAAACTTGGAGTTCCACAGTCTCTTCAACAATCCTTGGATGTTGAAAAAGTCAAGTCCGTCTTCCC
ATATGGAAAGATTCTGAATGTTGAGGTCGTCGATGGTGGCTTAATATGCTCCAGCGGTGTGCATGTAGAAGAAATGGGAGACAAAAATGATGACTGTTACATAGTAAATG
CTGCTGTATATGTTGGCTACTAA
Protein sequenceShow/hide protein sequence
MTASRILNLPIPWVTDLRFRSYPHSNNCSLSSAYLICPRISRLVKVTATSSMEVEQGGKSAPVSSTAPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRR
GSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY