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Tan0006032 (gene) of Snake gourd v1 genome

Gene IDTan0006032
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationLG09:68099807..68104517
RNA-Seq ExpressionTan0006032
SyntenyTan0006032
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063999.1 small nuclear ribonucleoprotein E-like [Cucumis melo var. makuwa]9.3e-3060.29Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGMRSFPPILWENDANPAEHIIEIEYSLPLNGAVGFTISFCLELLLPKGVSEQS
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK LG         END +PAEHIIEI++SL L GA+ FT +FC  +L  K +  Q 
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGMRSFPPILWENDANPAEHIIEIEYSLPLNGAVGFTISFCLELLLPKGVSEQS

Query:  PGLWEDWTTKLKRILEIIQVRAVVG---HMGPGNRT
        P +   W  +L    E  Q + VV    H+G GN T
Subjt:  PGLWEDWTTKLKRILEIIQVRAVVG---HMGPGNRT

KAF3452842.1 hypothetical protein FNV43_RR03275 [Rhamnella rubrinervis]4.2e-3071.17Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGMRSFPPILWENDANPAEHIIEIEYSLPLN
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LG +        N  +  EH+ E +     N
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGMRSFPPILWENDANPAEHIIEIEYSLPLN

Query:  GAVGFTISFCL
        G  G  + F L
Subjt:  GAVGFTISFCL

KAG2404782.1 CBL-interacting serine/threonine-protein [Vigna angularis]2.7e-2997.18Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

XP_003597961.1 small nuclear ribonucleoprotein E [Medicago truncatula]2.1e-2998.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

XP_022135003.1 small nuclear ribonucleoprotein E-like [Momordica charantia]2.1e-2998.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

TrEMBL top hitse value%identityAlignment
A0A5A7VEN8 Small nuclear ribonucleoprotein E4.5e-3060.29Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGMRSFPPILWENDANPAEHIIEIEYSLPLNGAVGFTISFCLELLLPKGVSEQS
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK LG         END +PAEHIIEI++SL L GA+ FT +FC  +L  K +  Q 
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGMRSFPPILWENDANPAEHIIEIEYSLPLNGAVGFTISFCLELLLPKGVSEQS

Query:  PGLWEDWTTKLKRILEIIQVRAVVG---HMGPGNRT
        P +   W  +L    E  Q + VV    H+G GN T
Subjt:  PGLWEDWTTKLKRILEIIQVRAVVG---HMGPGNRT

A0A6J1C3K6 Small nuclear ribonucleoprotein E1.0e-2998.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

A0A6J1EQZ2 Small nuclear ribonucleoprotein E1.0e-2998.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

A0A6J1I7N4 Small nuclear ribonucleoprotein E1.0e-2998.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

G7IMA2 Small nuclear ribonucleoprotein E1.0e-2998.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E9.7e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

A4FUI2 Small nuclear ribonucleoprotein E9.7e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

P62303 Small nuclear ribonucleoprotein E9.7e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

P62304 Small nuclear ribonucleoprotein E9.7e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

P62305 Small nuclear ribonucleoprotein E9.7e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein7.6e-3088.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

AT2G18740.2 Small nuclear ribonucleoprotein family protein4.4e-3086.49Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGMRS
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG  S
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGMRS

AT4G30330.1 Small nuclear ribonucleoprotein family protein2.0e-3090.14Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAGAAGGACCT
TAGGATTGAAGGCCGAATCATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAGACACTCGGTATGCGTT
CTTTCCCCCCCATTTTATGGGAAAATGATGCTAATCCAGCAGAACACATTATTGAGATAGAGTATTCATTACCATTGAATGGCGCTGTGGGTTTTACAATTAGCTTCTGT
TTGGAGTTGCTTTTACCAAAAGGCGTATCTGAGCAGTCACCAGGATTGTGGGAAGATTGGACTACGAAGCTAAAGAGAATTTTGGAGATAATCCAGGTGAGGGCGGTGGT
GGGGCACATGGGGCCAGGGAATCGCACCCCTCAGGTCATCCTGGCTTTTACCGATGCCCTTGCCCATGTGAGTTTTGGGGTATACTTTCAGCAAAATGGGGTCTCAAATA
GTACACTAGCACGTTGTTGTGATGGAACAATACGAGCTGAGGGATATATTGATAGTGAACTTTCAGGAAGCACAGAGGACCCTCACACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAGAAGGACCT
TAGGATTGAAGGCCGAATCATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAGACACTCGGTATGCGTT
CTTTCCCCCCCATTTTATGGGAAAATGATGCTAATCCAGCAGAACACATTATTGAGATAGAGTATTCATTACCATTGAATGGCGCTGTGGGTTTTACAATTAGCTTCTGT
TTGGAGTTGCTTTTACCAAAAGGCGTATCTGAGCAGTCACCAGGATTGTGGGAAGATTGGACTACGAAGCTAAAGAGAATTTTGGAGATAATCCAGGTGAGGGCGGTGGT
GGGGCACATGGGGCCAGGGAATCGCACCCCTCAGGTCATCCTGGCTTTTACCGATGCCCTTGCCCATGTGAGTTTTGGGGTATACTTTCAGCAAAATGGGGTCTCAAATA
GTACACTAGCACGTTGTTGTGATGGAACAATACGAGCTGAGGGATATATTGATAGTGAACTTTCAGGAAGCACAGAGGACCCTCACACTTGA
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGMRSFPPILWENDANPAEHIIEIEYSLPLNGAVGFTISFC
LELLLPKGVSEQSPGLWEDWTTKLKRILEIIQVRAVVGHMGPGNRTPQVILAFTDALAHVSFGVYFQQNGVSNSTLARCCDGTIRAEGYIDSELSGSTEDPHT