CuGenDBv2

Gene ID	Tan0006041
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	LG05:33966016..33966387
RNA-Seq Expression	Tan0006041
Synteny	Tan0006041
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]

2.9e-36

70.34

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Query:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL
        SSS     TS LFLLSNICNLV +RLDS NYVLWK+QV+SILKAHSLFGHIDD+LP P + + SST    +E++P Y+QW+SRDQALITL+NATLS SAL
Subjt:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL

Query:  AHVVGSESSKDLWFSLEK
         HVVGS +SK LW SLEK
Subjt:  AHVVGSESSKDLWFSLEK

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]

5.0e-36

62.77

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Query:  MVASSSSSTSPGTTSP--------------LFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWV
        M   SS S  PGT++P              LFLLSNICNLV +RLDS NYVLWK+QV+SILKAHSLFGHIDD+LP P + + SST    +E++P+Y+QW+
Subjt:  MVASSSSSTSPGTTSP--------------LFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWV

Query:  SRDQALITLVNATLSPSALAHVVGSESSKDLWFSLEK
        SRDQALITL+N TLS SALAHVV S SSK LW SLEK
Subjt:  SRDQALITLVNATLSPSALAHVVGSESSKDLWFSLEK

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]

1.0e-36

70.34

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Query:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL
        SSS S   TS LFLLSNICNLV +RLDS NY+LWK+QV+SILKAHS FGHIDD+LP P + + SST    +E++P+Y+QW+SR QALITL+NATLS SAL
Subjt:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL

Query:  AHVVGSESSKDLWFSLEK
        AHVVGS SSK LW SLEK
Subjt:  AHVVGSESSKDLWFSLEK

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.3e-36

70.34

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Query:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL
        SSS     TS LFLLSNICNLV +RLDS NYVLWK+QV+SILKAHSLFGHIDD+LP P + + SST    +E++P+Y+QW+SRDQALITL+NATLS SAL
Subjt:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL

Query:  AHVVGSESSKDLWFSLEK
         HVVGS +SK LW SLEK
Subjt:  AHVVGSESSKDLWFSLEK

TYK11141.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.6e-37

69.92

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Query:  MVASSSSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATL
        ++ SSS+ + P  TS LFLLSNICNLV +RLDS NYVLWK+QV+SILKAHSLFGHIDD+LP P +   SST    +E++P+Y+QW+SRDQALITL+NATL
Subjt:  MVASSSSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATL

Query:  SPSALAHVVGSESSKDLWFSLEK
        S SALAHVVGS SSK LW SLEK
Subjt:  SPSALAHVVGSESSKDLWFSLEK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UTE5 Putative mitochondrial protein

1.4e-36

70.34

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Query:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL
        SSS     TS LFLLSNICNLV +RLDS NYVLWK+QV+SILKAHSLFGHIDD+LP P + + SST    +E++P Y+QW+SRDQALITL+NATLS SAL
Subjt:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL

Query:  AHVVGSESSKDLWFSLEK
         HVVGS +SK LW SLEK
Subjt:  AHVVGSESSKDLWFSLEK

A0A5A7UZE5 Putative mitochondrial protein

2.4e-36

62.77

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Query:  MVASSSSSTSPGTTSP--------------LFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWV
        M   SS S  PGT++P              LFLLSNICNLV +RLDS NYVLWK+QV+SILKAHSLFGHIDD+LP P + + SST    +E++P+Y+QW+
Subjt:  MVASSSSSTSPGTTSP--------------LFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWV

Query:  SRDQALITLVNATLSPSALAHVVGSESSKDLWFSLEK
        SRDQALITL+N TLS SALAHVV S SSK LW SLEK
Subjt:  SRDQALITLVNATLSPSALAHVVGSESSKDLWFSLEK

A0A5A7VGG0 Retrotransposon protein

4.9e-37

70.34

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Query:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL
        SSS S   TS LFLLSNICNLV +RLDS NY+LWK+QV+SILKAHS FGHIDD+LP P + + SST    +E++P+Y+QW+SR QALITL+NATLS SAL
Subjt:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL

Query:  AHVVGSESSKDLWFSLEK
        AHVVGS SSK LW SLEK
Subjt:  AHVVGSESSKDLWFSLEK

A0A5D3BEU0 Putative mitochondrial protein

6.4e-37

70.34

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Query:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL
        SSS     TS LFLLSNICNLV +RLDS NYVLWK+QV+SILKAHSLFGHIDD+LP P + + SST    +E++P+Y+QW+SRDQALITL+NATLS SAL
Subjt:  SSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSAL

Query:  AHVVGSESSKDLWFSLEK
         HVVGS +SK LW SLEK
Subjt:  AHVVGSESSKDLWFSLEK

A0A5D3CH60 Putative mitochondrial protein

7.5e-38

69.92

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Query:  MVASSSSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATL
        ++ SSS+ + P  TS LFLLSNICNLV +RLDS NYVLWK+QV+SILKAHSLFGHIDD+LP P +   SST    +E++P+Y+QW+SRDQALITL+NATL
Subjt:  MVASSSSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATL

Query:  SPSALAHVVGSESSKDLWFSLEK
        S SALAHVVGS SSK LW SLEK
Subjt:  SPSALAHVVGSESSKDLWFSLEK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

8.3e-05

26.36

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Query:  VASSSSSTSPGT--TSPLFLLSNI-----CNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALIT
        +A +  S SP +   SP +L  +I      ++  L  D +NYV WK +  S L+    FG ID +LP+P+ F            SP Y  W   +  ++ 
Subjt:  VASSSSSTSPGT--TSPLFLLSNI-----CNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALIT

Query:  LVNATLSPSALAHVVGSESSKDLWFSLEK
         +  +++   L  V+ +E++  +W  L +
Subjt:  LVNATLSPSALAHVVGSESSKDLWFSLEK

Sequences

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CDS sequence

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ATGGTTGCATCTTCCTCCTCTTCAACTTCTCCTGGAACAACATCTCCTCTCTTTCTGTTATCCAACATATGCAACCTCGTGTCGCTGCGTTTGGACTCCAATAACTATGT
GCTTTGGAAGTTTCAAGTCGCCTCAATCTTGAAGGCTCACTCCCTCTTTGGACATATAGATGACTCTCTCCCACAACCGGAGCAATTTATGCGTTCATCAACAGGGACAC
CGACAACAGAGGTTAGTCCCGATTATATTCAATGGGTATCTCGTGATCAAGCTCTTATCACTTTAGTTAATGCCACTTTATCTCCATCTGCTCTTGCCCATGTCGTTGGA
TCTGAGTCTTCAAAAGATTTGTGGTTTTCTTTAGAAAAATGA

mRNA sequence

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Protein sequence

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MVASSSSSTSPGTTSPLFLLSNICNLVSLRLDSNNYVLWKFQVASILKAHSLFGHIDDSLPQPEQFMRSSTGTPTTEVSPDYIQWVSRDQALITLVNATLSPSALAHVVG
SESSKDLWFSLEK

Tan0006041 (gene) of Snake gourd v1 genome