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Tan0006068 (gene) of Snake gourd v1 genome

Gene IDTan0006068
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDynein light chain
Genome locationLG09:64980838..64981612
RNA-Seq ExpressionTan0006068
SyntenyTan0006068
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150050.1 dynein light chain 1, cytoplasmic [Cucumis sativus]4.5e-3788.04Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKATVKETDMSE MQ+HA ASAS+ALDLFDVSDSLSLA+HIKK+FD TYGSGWQCVVGSNFGCFFTHS G+FIYFSLETLNFLIFK+ S
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

XP_008462685.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]1.4e-3585.87Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKATVKETDMSE MQ+HA ASAS ALDLFDVSD LSLA++IKK+FD TYGSGWQCVVGSNFGCFFTHS G+FIYFSLETLNFLIFK+ S
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

XP_022144999.1 dynein light chain 1, cytoplasmic-like [Momordica charantia]7.9e-3486.52Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK
        MLEGK  VKETDMSE MQIHA ASAS ALDLFDVSD LSLAAHIKKEFDRTYG GWQCVVGSNFG FFTHS  +FIYF+LETLNFLIFK
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK

XP_022933771.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]1.9e-4093.55Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN
        MLEGKATVK+TDMSE MQIHAKASAS ALDLFDVSD LSLAAHIKKEFDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFKAASN
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN

XP_038878771.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]6.2e-3991.4Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN
        MLEGKATVKETDMSE MQ HA ASAS ALDLFDVSDSLSLAAHIKK+FDR YGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK+ SN
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN

TrEMBL top hitse value%identityAlignment
A0A1S3CJ38 Dynein light chain7.0e-3685.87Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKATVKETDMSE MQ+HA ASAS ALDLFDVSD LSLA++IKK+FD TYGSGWQCVVGSNFGCFFTHS G+FIYFSLETLNFLIFK+ S
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

A0A6J0ZN37 Dynein light chain5.0e-3478.49Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN
        MLEGKA +KETDMSE MQ  A ASAS+ALDL+DVSD +S+AAHIKKEFD+ YGSGWQCVVGSNFGCFFTH+KG+F+YF+L TLNFLIFK AS+
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN

A0A6J1CTX2 Dynein light chain3.8e-3486.52Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK
        MLEGK  VKETDMSE MQIHA ASAS ALDLFDVSD LSLAAHIKKEFDRTYG GWQCVVGSNFG FFTHS  +FIYF+LETLNFLIFK
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK

A0A6J1EZZ1 Dynein light chain9.4e-4193.55Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN
        MLEGKATVK+TDMSE MQIHAKASAS ALDLFDVSD LSLAAHIKKEFDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFKAASN
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN

A0A6J1I806 Dynein light chain9.4e-4193.55Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN
        MLEGKATVK+TDMSE MQIHAKASAS ALDLFDVSD LSLAAHIKKEFDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFKAASN
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN

SwissProt top hitse value%identityAlignment
P61273 Dynein light chain 1, cytoplasmic1.9e-1444.44Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE MQ  +   A++AL+ +++     +AAHIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P61285 Dynein light chain 1, cytoplasmic1.9e-1444.44Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE MQ  +   A++AL+ +++     +AAHIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P63167 Dynein light chain 1, cytoplasmic1.9e-1444.44Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE MQ  +   A++AL+ +++     +AAHIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P63168 Dynein light chain 1, cytoplasmic1.9e-1444.44Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE MQ  +   A++AL+ +++     +AAHIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

Q94748 Probable dynein light chain8.5e-1546.67Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M E KA +K  DM E+MQ  A  +A+ ALD +++     +AA+IKKEFDR Y   W C+VG +FG + TH    FIYF L+   FL+FK+
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 113.6e-1667.8Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCV
        MLEGKA V+++DM   MQ+ A A AS+ALDLFDV D  S+A HIKKEFD  YGSGWQCV
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.1e-3375Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKA V+++DM   MQ+ A A AS+ALDLFDV D  S+A HIKKEFD  YGSGWQCVVGSNFGCFFTHSKG+FIYF LETL FLIFK AS
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

AT3G16120.1 Dynein light chain type 1 family protein3.8e-3475Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKA V+ETDM   MQ+ A   AS++LDLFDV DS+S+AAHIKKEFD  YGSGWQCVVG+NFGCFFTHSKG+FIYF L TLNFLIFK A+
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

AT4G27360.1 Dynein light chain type 1 family protein1.8e-2354.95Show/hide
Query:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAA
        MLEGKA + +TDM + M+  A + AS+ALD FDV++   +A  IKKEFDR+YGSGWQC+VG++FG F TH  G FI+FS+ +L  L+FK +
Subjt:  MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAA

AT5G20110.1 Dynein light chain type 1 family protein3.9e-1550Show/hide
Query:  DMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK
        DM   MQ HA   A   LD  +   S  +A ++KKEFD+ YG  W C+VGS+FG F THS G FIYFS++ L  L+FK
Subjt:  DMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGAAGGGAAAGCCACCGTCAAAGAAACCGACATGTCGGAAAATATGCAGATTCACGCCAAGGCCTCTGCATCTCGCGCCCTCGATCTCTTCGACGTCTCCGATTC
CCTCTCCCTCGCCGCCCATATCAAGAAGGAATTTGATCGGACTTATGGGAGTGGCTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCAAAGGGGA
GTTTCATTTATTTTTCTCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCTAATTAA
mRNA sequenceShow/hide mRNA sequence
GCTTCGACCAGGAGATAAAGAAAGAAAGAAAGAAAGAAGAAGAAAAAAGAAAAAGGTTTATGTAAATTCCATTCGGATTTGGATTTGGAAGCCACAGATTTTACATTTCT
CCTTCTCTCCAGTTCTCTTATATATATAAATAAAAATAAAACTTCAATTCCAAACCCAGCAATTCTTGCAATTATAAAATAGACGGAATTAAGAAGATGCTGGAAGGGAA
AGCCACCGTCAAAGAAACCGACATGTCGGAAAATATGCAGATTCACGCCAAGGCCTCTGCATCTCGCGCCCTCGATCTCTTCGACGTCTCCGATTCCCTCTCCCTCGCCG
CCCATATCAAGAAGGAATTTGATCGGACTTATGGGAGTGGCTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCAAAGGGGAGTTTCATTTATTTT
TCTCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCTAATTAATTTTTACATAATTATTATTTCTTTTCACACACACCAGCCCGGTCATCAGAAAATAGAAAGCT
AGAAATGCTTTCATTTTCAGGGGCAGCCTCGTCTTTTCCTCTCTCTCTCTCAATCTCTAAAATTACATGGAACGAACGAAGTAACCATGTATGTATGTGTAATTATTTTC
AATTTCTTCGAACTTCTCCTTCTAGCGTGTAATTTGATGAT
Protein sequenceShow/hide protein sequence
MLEGKATVKETDMSENMQIHAKASASRALDLFDVSDSLSLAAHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASN