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Tan0006088 (gene) of Snake gourd v1 genome

Gene IDTan0006088
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG05:56391587..56392462
RNA-Seq ExpressionTan0006088
SyntenyTan0006088
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025749.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]3.5e-2575.64Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEICDDEYVE
        ME ESSN+KKNEASKE +EKS+S+Q WKCKGFGHMSK+CVNK+VMVIRNG++DS+DEC+EHDAP +EES+  DDEY+E
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEICDDEYVE

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]7.2e-2376.25Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQ WKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  +EE E   DDEY+EE
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE

TYK06180.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]5.0e-2474.36Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEICDDEYVE
        ME ESSN+KKNEASKE +EKS+S+Q WKCKGFGHMSK+CVNK+VMVIRNG++DS+DE +EHDAP +EES+  DDEY+E
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEICDDEYVE

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]7.2e-2376.25Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQ WKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  +EE E   DDEY+EE
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]7.2e-2376.25Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQ WKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  +EE E   DDEY+EE
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE

TrEMBL top hitse value%identityAlignment
A0A5A7SKE7 Transposon Ty3-I Gag-Pol polyprotein1.7e-2575.64Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEICDDEYVE
        ME ESSN+KKNEASKE +EKS+S+Q WKCKGFGHMSK+CVNK+VMVIRNG++DS+DEC+EHDAP +EES+  DDEY+E
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEICDDEYVE

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein3.5e-2376.25Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQ WKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  +EE E   DDEY+EE
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE

A0A5D3C4C3 Transposon Ty3-I Gag-Pol polyprotein2.4e-2474.36Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEICDDEYVE
        ME ESSN+KKNEASKE +EKS+S+Q WKCKGFGHMSK+CVNK+VMVIRNG++DS+DE +EHDAP +EES+  DDEY+E
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEICDDEYVE

A0A5D3C8C6 CCHC-type domain-containing protein3.5e-2376.25Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQ WKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  +EE E   DDEY+EE
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE

A0A5D3CCP8 CCHC-type domain-containing protein3.5e-2376.25Show/hide
Query:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQ WKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  +EE E   DDEY+EE
Subjt:  MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEI-CDDEYVEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAGGGAAAAGTCTAGTTCTATTCAACGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAA
AGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATGATGCACCATTTAAGGAAGAATCTGAAATATGTGATG
ATGAGTATGTTGAAGAAGAAAGAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAGGGAAAAGTCTAGTTCTATTCAACGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAA
AGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATGATGCACCATTTAAGGAAGAATCTGAAATATGTGATG
ATGAGTATGTTGAAGAAGAAAGAATGTGA
Protein sequenceShow/hide protein sequence
MEVESSNAKKNEASKEVREKSSSIQRWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFKEESEICDDEYVEEERM