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Tan0006090 (gene) of Snake gourd v1 genome

Gene IDTan0006090
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG06:50809321..50864673
RNA-Seq ExpressionTan0006090
SyntenyTan0006090
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051908.1 putative gag protein [Cucumis melo var. makuwa]1.8e-1571.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]1.8e-1571.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
TYK21797.1 uncharacterized protein E5676_scaffold991G00010 [Cucumis melo var. makuwa]4.7e-1671.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R+ QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.8e-1571.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]1.8e-1571.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
TrEMBL top hitse value%identityAlignment
A0A5A7U9D0 Putative gag protein8.6e-1671.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
A0A5A7VII0 Uncharacterized protein8.6e-1671.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
A0A5D3C3D3 F15O4.138.6e-1671.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
A0A5D3DDM5 Uncharacterized protein2.3e-1671.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R+ QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
A0A5D3DRJ1 F15O4.138.6e-1671.05Show/hide
Query:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
        MS D  E+VP+V+DPN+AILQAIQGM+E+MREER+ERRAQQQRE R  QEDEGMFDL   ER LGGRGN     RN
Subjt:  MSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCTGAAGGAGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCATATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCT
TTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAATAAGTGTCCTTATAAAAA
AAATGTCACAAGATAATAAAGAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGATGATGAGAGAAGAAAGGGAAGAA
AGGAGAGCACAACAACAAAGAGAAGAACGGATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATGATAGTTTTGT
GAATAGGAATGAACCGACACAACAAAGAAGCAAATTTGTTGCTGCCAAAAGAGTGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGTCGGATCACC
TCCAAAGGGCCCGACCCTCTCATTGGCCCGAGAGGGACTCTGTTTCTGGTGTTACGAACATTCGTGAAGGATTGACTTGCTGTTATTGGTCAATATCCATGGACACAGAA
ATACATCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACCTGAAGGAGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCATATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCT
TTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAATAAGTGTCCTTATAAAAA
AAATGTCACAAGATAATAAAGAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGATGATGAGAGAAGAAAGGGAAGAA
AGGAGAGCACAACAACAAAGAGAAGAACGGATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATGATAGTTTTGT
GAATAGGAATGAACCGACACAACAAAGAAGCAAATTTGTTGCTGCCAAAAGAGTGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGTCGGATCACC
TCCAAAGGGCCCGACCCTCTCATTGGCCCGAGAGGGACTCTGTTTCTGGTGTTACGAACATTCGTGAAGGATTGACTTGCTGTTATTGGTCAATATCCATGGACACAGAA
ATACATCTGTAG
Protein sequenceShow/hide protein sequence
MYLKESKAKKIQEAFILHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKISVLIKKMSQDNKEKVPQVVDPNMAILQAIQGMMEMMREEREE
RRAQQQREERILQEDEGMFDLQVQERNLGGRGNDSFVNRNEPTQQRSKFVAAKRVEAESSNAKKNEASKESDHLQRARPSHWPERDSVSGVTNIREGLTCCYWSISMDTE
IHL