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Tan0006131 (gene) of Snake gourd v1 genome

Gene IDTan0006131
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptioncytochrome b-c1 complex subunit 6-like
Genome locationLG01:6892825..6896789
RNA-Seq ExpressionTan0006131
SyntenyTan0006131
Gene Ontology termsGO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c (biological process)
GO:0005750 - mitochondrial respiratory chain complex III (cellular component)
InterPro domainsIPR003422 - Cytochrome b-c1 complex, subunit 6
IPR023184 - Ubiquinol-cytochrome C reductase hinge domain
IPR036811 - Ubiquinol-cytochrome C reductase hinge domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650514.1 hypothetical protein Csa_011326 [Cucumis sativus]6.5e-3683.52Show/hide
Query:  QGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        Q FLA SF PSQY     S    ADEEPVDQKRY EEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKL  KLK
Subjt:  QGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

KAG6576964.1 Cytochrome b-c1 complex subunit 6-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3982.29Show/hide
Query:  FLLQLQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        F+ QLQGFL +SFAPSQY++        ADEEPVDQKRY EEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCIDKCVAPKLF KLK
Subjt:  FLLQLQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

KAG6600342.1 Cytochrome b-c1 complex subunit 6-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3781.72Show/hide
Query:  QLQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        +LQGFLA+SFAPSQ ++        ADEEPVDQKRY EEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKLF K+K
Subjt:  QLQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

KAG7014985.1 hypothetical protein SDJN02_22616, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-3782.61Show/hide
Query:  LQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        +QGFL +SFAPSQY++        ADEEPVDQKRY EEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCIDKCVAPKLF KLK
Subjt:  LQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

XP_022942987.1 cytochrome b-c1 complex subunit 6-like [Cucurbita moschata]2.1e-5072.46Show/hide
Query:  VPDPTR-------PKTICGNIVILQFLNFETKPNQSCWFPPRFLLQLQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQAC
        VPDPTR        +   G  V LQFL+F+TKP QS WF PRF+L LQGFLA+SFAPSQ ++        ADEEPVDQKRY EEACKPKCVKPLLEYQAC
Subjt:  VPDPTR-------PKTICGNIVILQFLNFETKPNQSCWFPPRFLLQLQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQAC

Query:  VKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        VKRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKLF K+K
Subjt:  VKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

TrEMBL top hitse value%identityAlignment
A0A0A0L6I2 UCR_hinge domain-containing protein1.5e-3384.15Show/hide
Query:  PSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        PS +   NV  +  ADEEPVDQKRY EEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKL  KLK
Subjt:  PSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

A0A1S3C350 Cytochrome b-c1 complex subunit 61.9e-3397.06Show/hide
Query:  ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        ADEEPVDQKRY EEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLF KLK
Subjt:  ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

A0A5E4EXD3 PREDICTED: cytochrome3.3e-3382.72Show/hide
Query:  YFISNVSFFFW--ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        Y I +V  F +  ADEEPVDQK+Y EE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSC+DKCVAPKLFPKLK
Subjt:  YFISNVSFFFW--ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

A0A6J1FRR8 cytochrome b-c1 complex subunit 6-like1.0e-5072.46Show/hide
Query:  VPDPTR-------PKTICGNIVILQFLNFETKPNQSCWFPPRFLLQLQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQAC
        VPDPTR        +   G  V LQFL+F+TKP QS WF PRF+L LQGFLA+SFAPSQ ++        ADEEPVDQKRY EEACKPKCVKPLLEYQAC
Subjt:  VPDPTR-------PKTICGNIVILQFLNFETKPNQSCWFPPRFLLQLQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKPKCVKPLLEYQAC

Query:  VKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        VKRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKLF K+K
Subjt:  VKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

M5XBF4 UCR_hinge domain-containing protein3.3e-3382.72Show/hide
Query:  YFISNVSFFFW--ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        Y I +V  F +  ADEEPVDQK+Y EE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSC+DKCVAPKLFPKLK
Subjt:  YFISNVSFFFW--ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

SwissProt top hitse value%identityAlignment
P48504 Cytochrome b-c1 complex subunit 61.8e-2572.06Show/hide
Query:  ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        +DEE VD K   E +CKPKCV+ L EYQAC KR++GD+SGHKHCTGQYFDYW CIDKCVA KLF  LK
Subjt:  ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

Q0WWE3 Cytochrome b-c1 complex subunit 6-1, mitochondrial9.2e-3388.24Show/hide
Query:  ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        AD+E VD K+Y EE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW CIDKCVAPKLF KLK
Subjt:  ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

Q1ZXP3 Probable cytochrome b-c1 complex subunit 68.6e-0743.86Show/hide
Query:  EEACKPKCVKPLLEYQACVKRIQGDDSGHK-HCTGQYFDYWSCIDKCVAPKLFPKLK
        +E C   C K    YQAC  R+   +   K +C GQ+ ++  CIDKCV PKLF +LK
Subjt:  EEACKPKCVKPLLEYQACVKRIQGDDSGHK-HCTGQYFDYWSCIDKCVAPKLFPKLK

Q9SJV7 Cytochrome b-c1 complex subunit 6-2, mitochondrial2.0e-2784.75Show/hide
Query:  DEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
        +E+ VDQKRYFEE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW C+DKCV+
Subjt:  DEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA

Arabidopsis top hitse value%identityAlignment
AT1G15120.1 Ubiquinol-cytochrome C reductase hinge protein6.5e-3488.24Show/hide
Query:  ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK
        AD+E VD K+Y EE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW CIDKCVAPKLF KLK
Subjt:  ADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK

AT1G15120.2 Ubiquinol-cytochrome C reductase hinge protein1.4e-2885.25Show/hide
Query:  FFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKC
        F  AD+E VD K+Y EE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW CIDKC
Subjt:  FFWADEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKC

AT2G01090.1 Ubiquinol-cytochrome C reductase hinge protein1.4e-2884.75Show/hide
Query:  DEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
        +E+ VDQKRYFEE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW C+DKCV+
Subjt:  DEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA

AT2G01090.2 Ubiquinol-cytochrome C reductase hinge protein1.4e-2884.75Show/hide
Query:  DEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
        +E+ VDQKRYFEE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW C+DKCV+
Subjt:  DEEPVDQKRYFEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTAACTCCAAAGTGGAGCTTTTATATTTCCATCCTACATTTTACAGCTTTGACTCCGGCGGTCCGACGTGGCTTCTGTCGGGTACCCGACCCGACCCGACCCAA
AACAATTTGCGGAAACATTGTCATATTGCAATTTCTCAACTTCGAAACTAAACCTAATCAGAGTTGCTGGTTTCCTCCCAGATTCCTGCTTCAGCTCCAAGGTTTTCTAG
CCTGGTCTTTTGCTCCAAGTCAGTACTTCATTAGCAATGTGAGTTTCTTTTTTTGGGCGGATGAAGAACCTGTTGATCAGAAAAGGTATTTTGAAGAAGCTTGCAAGCCC
AAGTGTGTGAAACCACTACTTGAATATCAGGCGTGCGTGAAGAGAATCCAAGGGGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCAT
CGACAAATGTGTTGCACCAAAACTATTTCCGAAACTAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTAACTCCAAAGTGGAGCTTTTATATTTCCATCCTACATTTTACAGCTTTGACTCCGGCGGTCCGACGTGGCTTCTGTCGGGTACCCGACCCGACCCGACCCAA
AACAATTTGCGGAAACATTGTCATATTGCAATTTCTCAACTTCGAAACTAAACCTAATCAGAGTTGCTGGTTTCCTCCCAGATTCCTGCTTCAGCTCCAAGGTTTTCTAG
CCTGGTCTTTTGCTCCAAGTCAGTACTTCATTAGCAATGTGAGTTTCTTTTTTTGGGCGGATGAAGAACCTGTTGATCAGAAAAGGTATTTTGAAGAAGCTTGCAAGCCC
AAGTGTGTGAAACCACTACTTGAATATCAGGCGTGCGTGAAGAGAATCCAAGGGGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCAT
CGACAAATGTGTTGCACCAAAACTATTTCCGAAACTAAAGTAA
Protein sequenceShow/hide protein sequence
MNVTPKWSFYISILHFTALTPAVRRGFCRVPDPTRPKTICGNIVILQFLNFETKPNQSCWFPPRFLLQLQGFLAWSFAPSQYFISNVSFFFWADEEPVDQKRYFEEACKP
KCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFPKLK