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Tan0006132 (gene) of Snake gourd v1 genome

Gene IDTan0006132
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG01:3682867..3683139
RNA-Seq ExpressionTan0006132
SyntenyTan0006132
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]9.4e-0844.78Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI
        QW PP+  +W L+ +A+W +D N GG+GWI+RD +G V+ A    I     I  LE+  I +GLRAI
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.8e-0641.79Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI
        +W PP+  +W L+ DA+W +D N  G+GWI+RD +G V+      I     I  LE+  I +GLRAI
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.8e-0641.79Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI
        +W PP+  +W L+ DA+W +D N  G+GWI+RD +G V+      I     I  LE+  I +GLRAI
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.5e-1044.93Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAITN
        +W PP +  W+L+ DASW    + GG+GWIIR W+G +V A + F+     + +LE S IL+GLR +TN
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAITN

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.5e-0846.27Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI
        +W PP+  +W L+ DA+W +D N GG+GWI+RD +G V+ A    I T   I  LE+  I +GLRAI
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134124.6e-0844.78Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI
        QW PP+  +W L+ +A+W +D N GG+GWI+RD +G V+ A    I     I  LE+  I +GLRAI
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X18.6e-0741.79Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI
        +W PP+  +W L+ DA+W +D N  G+GWI+RD +G V+      I     I  LE+  I +GLRAI
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI

A0A6J1DNV9 uncharacterized protein LOC1110224031.7e-1044.93Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAITN
        +W PP +  W+L+ DASW    + GG+GWIIR W+G +V A + F+     + +LE S IL+GLR +TN
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAITN

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X28.6e-0741.79Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI
        +W PP+  +W L+ DA+W +D N  G+GWI+RD +G V+      I     I  LE+  I +GLRAI
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI

A0A6J1DSV1 uncharacterized protein LOC1110236081.2e-0846.27Show/hide
Query:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI
        +W PP+  +W L+ DA+W +D N GG+GWI+RD +G V+ A    I T   I  LE+  I +GLRAI
Subjt:  QWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGCCCCCGTTGAGACACCTCCACAGTCTTCTTCCTCTTCCTCCACGATTGTACCGGATCAGTGGAACCCTCCGAGCCTAGGTGCCTGGAGCCTTAGTATGGATGC
ATCATGGGATTCAGATCGTAATTATGGTGGCTTAGGATGGATTATCCGTGATTGGGAAGGAACGGTGGTTTGTGCGAGACATCATTTTATCCTCACAAATTGGCCAATTT
TGATTCTAGAGCTTAGTGGGATCCTCCAAGGTTTGAGAGCAATAACAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGCCCCCGTTGAGACACCTCCACAGTCTTCTTCCTCTTCCTCCACGATTGTACCGGATCAGTGGAACCCTCCGAGCCTAGGTGCCTGGAGCCTTAGTATGGATGC
ATCATGGGATTCAGATCGTAATTATGGTGGCTTAGGATGGATTATCCGTGATTGGGAAGGAACGGTGGTTTGTGCGAGACATCATTTTATCCTCACAAATTGGCCAATTT
TGATTCTAGAGCTTAGTGGGATCCTCCAAGGTTTGAGAGCAATAACAAACTAA
Protein sequenceShow/hide protein sequence
MPAPVETPPQSSSSSSTIVPDQWNPPSLGAWSLSMDASWDSDRNYGGLGWIIRDWEGTVVCARHHFILTNWPILILELSGILQGLRAITN