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Tan0006165 (gene) of Snake gourd v1 genome

Gene IDTan0006165
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 20-like
Genome locationLG10:1788005..1789226
RNA-Seq ExpressionTan0006165
SyntenyTan0006165
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]1.2e-2890Show/hide
Query:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SS STSRAFS  FT FALIFFI+SPLVDAHSS PAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]3.0e-2990.24Show/hide
Query:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSS--TPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SSNSTSRAFSG FTFF LI FILSPLVDAHSS   PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSS--TPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]9.4e-3192.5Show/hide
Query:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SSNSTSRAFSG FTFF LI FILSPLVDAHSS PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_023538848.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]1.5e-2889.02Show/hide
Query:  MASSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSS+ST  AFSGFFT FALIFFILSPLV AHSS  APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  MASSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]7.5e-2892.41Show/hide
Query:  SSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        SSNSTSRAFSG FTFFALIFFILSPLVDA    PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSY+FFLN
Subjt:  SSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

TrEMBL top hitse value%identityAlignment
A0A6J1D1D7 arabinogalactan peptide 20-like5.6e-2990Show/hide
Query:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SS STSRAFS  FT FALIFFI+SPLVDAHSS PAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1E8M6 arabinogalactan peptide 16-like1.5e-2990.24Show/hide
Query:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSS--TPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SSNSTSRAFSG FTFF LI FILSPLVDAHSS   PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSS--TPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1F1F2 arabinogalactan peptide 20-like4.0e-2787.5Show/hide
Query:  ASSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFL
        +SSS+ST  AFSGFFT FALIFFILSPLV AHSS  APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFL
Subjt:  ASSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFL

A0A6J1IAU1 arabinogalactan peptide 16-like3.6e-2887.8Show/hide
Query:  MASSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSS+ST  AFSGFFT FALIFFIL PLV AHSS  APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  MASSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1IQM6 arabinogalactan peptide 20-like8.0e-2886.59Show/hide
Query:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSS--TPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SSNST RAFSG FTFF LI FILSPL+DAHSS  +PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASS NFFLN
Subjt:  SSSNSTSRAFSGFFTFFALIFFILSPLVDAHSS--TPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.3e-1468.18Show/hide
Query:  FTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  FTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

Q8L9T8 Arabinogalactan protein 411.4e-1368.75Show/hide
Query:  STSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        S SR F G  T  ++IF IL P+  AH+ + APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  STSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9FK16 Arabinogalactan protein 226.6e-1169.23Show/hide
Query:  FALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        F +I  IL P+  +HSS  +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  FALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9M373 Arabinogalactan protein 207.5e-1563.51Show/hide
Query:  SRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        SR        FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  SRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 169.1e-1668.18Show/hide
Query:  FTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  FTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

AT3G61640.1 arabinogalactan protein 205.3e-1663.51Show/hide
Query:  SRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        SR        FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  SRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

AT5G24105.1 arabinogalactan protein 411.0e-1468.75Show/hide
Query:  STSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        S SR F G  T  ++IF IL P+  AH+ + APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  STSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

AT5G53250.1 arabinogalactan protein 224.7e-1269.23Show/hide
Query:  FALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        F +I  IL P+  +HSS  +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  FALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCTCCAATTCTACTTCTAGGGCTTTCTCCGGCTTCTTCACCTTCTTCGCTCTCATCTTCTTCATTCTATCACCACTCGTTGACGCGCACTCTTCGACCCC
CGCTCCCGCTCCCGCTCCCGCAAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTCTTGATGCTGGTGGCGTTGGTTCTCACGTATCTGATTCACCCTCTCGATG
CATCCTCCTACAACTTTTTTCTGAATTGA
mRNA sequenceShow/hide mRNA sequence
CGTTCAATTATGAAGAAGGTTATAATTTCTAAATTGAAAAAGATTAAAAAAAAAAAGAAGTATGATTTGTAGAATAGTAATTTGAAATAAAAATTAGAATAAAGGGGAAA
AAAAAGTTGTGGAGCCCACTTATATTGGGTTTGACGAATGCCACACCACACTAGTGCCTTTGCCGGTTTCTTCTCTGTTCTCTCTCTCTTTTTTTTTTTTATAAAAACCA
AAATCACCACATTCTCCTCCGCCCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCAACCTTTGATCGGAAGTTGCAGAGATTTGATCGGAGCTCGTAGG
AATGGCGTCCTCCTCCAATTCTACTTCTAGGGCTTTCTCCGGCTTCTTCACCTTCTTCGCTCTCATCTTCTTCATTCTATCACCACTCGTTGACGCGCACTCTTCGACCC
CCGCTCCCGCTCCCGCTCCCGCAAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTCTTGATGCTGGTGGCGTTGGTTCTCACGTATCTGATTCACCCTCTCGAT
GCATCCTCCTACAACTTTTTTCTGAATTGAATTATAGGATTGTAGCAATGAATGTTGGCGCTGTTTTTGGGATCGATCATTGAAGGAAGAAGTAGGGCCAACTTTCTTTC
TCTCGTTGTGATAAATTTAGGGTTGAAGAGGAATGTGCATATTGGGTTTCCCAGATTTTGATCCTTTCTCTTATTTATTGATTGTTTATTCGATTTCTTTTCAATTTTGT
TTATCATAATTTATTCATTCGATCCATTTTGCAAAGCTTTTCCAGTCTGCAACTTGTTTGATTGATGTTAGAATTAGAACTTGGAAGAGAGAGTTCGAAGCCACCATTTT
TTTTCTCCTAATATTATTGTCTTCTTCGAGAGAACAGGATATGGCTTCCCTCTACGTTGTGCTTGGACTCTGCAAAAGTTCATTCACTTTACCAATGGCCAAGCCAAGTA
TGCAATGTGTTTCACTTCTTTAAAGGGGAAAAGACTTGATTTTTGAATGATTCAAATTAAAATGGTTAAAATCAATGTAAATAACTCCAAAA
Protein sequenceShow/hide protein sequence
MASSSNSTSRAFSGFFTFFALIFFILSPLVDAHSSTPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN