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Tan0006176 (gene) of Snake gourd v1 genome

Gene IDTan0006176
OrganismTrichosanthes anguina (Snake gourd v1)
Description30S ribosomal protein S31, chloroplastic
Genome locationLG03:64127625..64128188
RNA-Seq ExpressionTan0006176
SyntenyTan0006176
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR030826 - 30S ribosomal protein
IPR044695 - 30S ribosomal protein S31, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008449316.1 PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo]1.1e-4686.89Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP
        M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SS SSIPAVYCGRGDKKTE+GKRFNHSYGNARPRDKTKGRG PRV  PPSPP
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP

Query:  RKDKFDDDEKIKIEIDESLFSS
        RKDKFDDDEKIKIEIDESLF+S
Subjt:  RKDKFDDDEKIKIEIDESLFSS

XP_022151467.1 30S ribosomal protein S31, chloroplastic [Momordica charantia]9.3e-5191.67Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR
        MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLA SATSS SS+PAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRG PRV  PP+PPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR

Query:  KDKFDDDEKIKIEIDESLFS
        KDKF+DDEKIKIEID+SLF+
Subjt:  KDKFDDDEKIKIEIDESLFS

XP_022931892.1 30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata]2.0e-4587.5Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR
        MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST +   SATSS SSIPAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRG PRV  PPSPPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR

Query:  KDKFDDDEKIKIEIDESLFS
        KDKFDDDEKIKIEIDESLFS
Subjt:  KDKFDDDEKIKIEIDESLFS

XP_023517799.1 30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]2.6e-4587.5Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR
        MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST     SATSS SSIPAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRG PRV  PPSPPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR

Query:  KDKFDDDEKIKIEIDESLFS
        KDKFDDDEKIKIEIDESLFS
Subjt:  KDKFDDDEKIKIEIDESLFS

XP_038882305.1 30S ribosomal protein S31, chloroplastic [Benincasa hispida]2.5e-4890.16Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP
        MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA STASLA S TSS SSIPAVYCGRGDKKTEKGKRFN SYGNARPR+KTKGRG PRV  PPSPP
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP

Query:  RKDKFDDDEKIKIEIDESLFSS
        RKDKF+DDEKIKIEIDESLF++
Subjt:  RKDKFDDDEKIKIEIDESLFSS

TrEMBL top hitse value%identityAlignment
A0A1S3BL51 30S ribosomal protein S31, chloroplastic5.1e-4786.89Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP
        M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SS SSIPAVYCGRGDKKTE+GKRFNHSYGNARPRDKTKGRG PRV  PPSPP
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP

Query:  RKDKFDDDEKIKIEIDESLFSS
        RKDKFDDDEKIKIEIDESLF+S
Subjt:  RKDKFDDDEKIKIEIDESLFSS

A0A5A7TU27 30S ribosomal protein S315.1e-4786.89Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP
        M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SS SSIPAVYCGRGDKKTE+GKRFNHSYGNARPRDKTKGRG PRV  PPSPP
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP

Query:  RKDKFDDDEKIKIEIDESLFSS
        RKDKFDDDEKIKIEIDESLF+S
Subjt:  RKDKFDDDEKIKIEIDESLFSS

A0A6J1DDL3 30S ribosomal protein S31, chloroplastic4.5e-5191.67Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR
        MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLA SATSS SS+PAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRG PRV  PP+PPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR

Query:  KDKFDDDEKIKIEIDESLFS
        KDKF+DDEKIKIEID+SLF+
Subjt:  KDKFDDDEKIKIEIDESLFS

A0A6J1EV33 30S ribosomal protein S31, chloroplastic-like9.7e-4687.5Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR
        MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST +   SATSS SSIPAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRG PRV  PPSPPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR

Query:  KDKFDDDEKIKIEIDESLFS
        KDKFDDDEKIKIEIDESLFS
Subjt:  KDKFDDDEKIKIEIDESLFS

A0A6J1HRX4 30S ribosomal protein S31, chloroplastic9.7e-4687.5Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR
        MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST +   SATSS SSIPAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRG PRV  PPSPPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPR

Query:  KDKFDDDEKIKIEIDESLFS
        KDKFDDDEKIKIEIDESLFS
Subjt:  KDKFDDDEKIKIEIDESLFS

SwissProt top hitse value%identityAlignment
O80439 30S ribosomal protein S31, chloroplastic2.3e-2870.41Show/hide
Query:  SFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFSS
        S S SET G SL   T   + S TSS+SSIP VYCGRGD+KT KGKRFNHS+GNARPR+K+KGRG  RV  PP+PPRKDKF++DEKIKI+IDESLFS+
Subjt:  SFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFSS

P47909 30S ribosomal protein S31, mitochondrial2.7e-0563.04Show/hide
Query:  AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGIPRVTAPPSPP
        AV CGRGDKKT++GKRF  SYGNARP R+K   R   RV  P S P
Subjt:  AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGIPRVTAPPSPP

P47910 30S ribosomal protein S31, chloroplastic1.8e-1245.45Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETL-GTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP
        MASL  G    A  S +     FSFS S+++ G SL +      +S+ S++ ++P +YCGRGD+KT KGKRFNHS+GNARP++K KGRG      PP  P
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETL-GTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPP

Query:  RKDKFDDDEK
           K D  +K
Subjt:  RKDKFDDDEK

Arabidopsis top hitse value%identityAlignment
AT2G38140.1 plastid-specific ribosomal protein 41.6e-2970.41Show/hide
Query:  SFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFSS
        S S SET G SL   T   + S TSS+SSIP VYCGRGD+KT KGKRFNHS+GNARPR+K+KGRG  RV  PP+PPRKDKF++DEKIKI+IDESLFS+
Subjt:  SFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCACTTCCTTTTGGACTTCTTCAGGCCGCATCTCAATCTCCTACTCTTTCTCCTCGTTTCTTCTCTTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTGC
TTCTACTGCTTCTCTCGCAGCCTCTGCAACTTCGTCAACTTCTTCAATTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAATCACT
CGTACGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGATTCCGAGAGTGACGGCTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATC
AAGATCGAGATTGACGAGTCTCTTTTCTCTAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCACTTCCTTTTGGACTTCTTCAGGCCGCATCTCAATCTCCTACTCTTTCTCCTCGTTTCTTCTCTTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTGC
TTCTACTGCTTCTCTCGCAGCCTCTGCAACTTCGTCAACTTCTTCAATTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAATCACT
CGTACGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGATTCCGAGAGTGACGGCTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATC
AAGATCGAGATTGACGAGTCTCTTTTCTCTAGCTAG
Protein sequenceShow/hide protein sequence
MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKI
KIEIDESLFSS