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Tan0006180 (gene) of Snake gourd v1 genome

Gene IDTan0006180
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG04:44892217..44892459
RNA-Seq ExpressionTan0006180
SyntenyTan0006180
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-2576.25Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        M+TA+EIM SLQ MFGQ S  +++DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFL
Subjt:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-2576.25Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        M+TA+EIM SLQ MFGQ S  +++DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFL
Subjt:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-2576.25Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        M+TA+EIM SLQ MFGQ S  +++DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFL
Subjt:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-2576.25Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        M+TA+EIM SLQ MFGQ S  +++DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFL
Subjt:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]8.9e-2677.22Show/hide
Query:  ITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        +T KEIM SLQ+MFGQPS   R++ALK+VYNSRMKEG+SVREHVLN+MVHFNVAE NG+VIDE SQ SFI+ESLPK+FL
Subjt:  ITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein9.6e-2676.25Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        M+TA+EIM SLQ MFGQ S  +++DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFL
Subjt:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

A0A5A7TU93 Gag/pol protein9.6e-2676.25Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        M+TA+EIM SLQ MFGQ S  +++DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFL
Subjt:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

A0A5A7V4M1 Gag/pol protein9.6e-2676.25Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        M+TA+EIM SLQ MFGQ S  +++DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFL
Subjt:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

A0A5D3CPJ6 Gag/pol protein9.6e-2676.25Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        M+TA+EIM SLQ MFGQ S  +++DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFL
Subjt:  MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

A0A6J1DWL0 uncharacterized protein LOC1110247344.3e-2677.22Show/hide
Query:  ITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL
        +T KEIM SLQ+MFGQPS   R++ALK+VYNSRMKEG+SVREHVLN+MVHFNVAE NG+VIDE SQ SFI+ESLPK+FL
Subjt:  ITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCACCGCAAAAGAGATCATGGGATCATTACAGGCCATGTTTGGACAACCGTCCTCATCGGTCCGTTATGATGCTCTCAAGTACGTTTACAACTCCCGAATGAAGGA
GGGAACATCTGTTAGGGAGCATGTCCTTAATATGATGGTCCACTTCAACGTGGCAGAGGTAAACGGGGTTGTCATTGATGAGAACAGTCAGGTTAGCTTTATAATGGAAT
CTCTTCCGAAGAGTTTCCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCACCGCAAAAGAGATCATGGGATCATTACAGGCCATGTTTGGACAACCGTCCTCATCGGTCCGTTATGATGCTCTCAAGTACGTTTACAACTCCCGAATGAAGGA
GGGAACATCTGTTAGGGAGCATGTCCTTAATATGATGGTCCACTTCAACGTGGCAGAGGTAAACGGGGTTGTCATTGATGAGAACAGTCAGGTTAGCTTTATAATGGAAT
CTCTTCCGAAGAGTTTCCTGTAG
Protein sequenceShow/hide protein sequence
MITAKEIMGSLQAMFGQPSSSVRYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGVVIDENSQVSFIMESLPKSFL