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Tan0006189 (gene) of Snake gourd v1 genome

Gene IDTan0006189
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG05:9557054..9557530
RNA-Seq ExpressionTan0006189
SyntenyTan0006189
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3966504.1 hypothetical protein CMV_009401 [Castanea mollissima]8.8e-0944.94Show/hide
Query:  QDKQKIPPIQAQP---NWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKSIV-GIMEIDVIEALAIWKGCIWQKRWDS
        Q KQ   P Q +P   NW+PP    +KIN D A+  E+   GIG VVRNE+GEVM +LA+ IV     ++VIEA+   +  +WQ+ W S
Subjt:  QDKQKIPPIQAQP---NWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKSIV-GIMEIDVIEALAIWKGCIWQKRWDS

KAF4382136.1 hypothetical protein G4B88_009426 [Cannabis sativa]5.7e-0831.01Show/hide
Query:  MCWCVWNERNRDLILNKTNVRECVNEW--TYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLT
        + W +W  RN  +  +K         W      T+++P        Q  +KIP IQ   +W PP   FF INTD +LN   Q C I  V+R+  G +++ 
Subjt:  MCWCVWNERNRDLILNKTNVRECVNEW--TYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLT

Query:  LAKSIVGIMEIDVIEALAIWKGCIWQKRW
            I G + + + EA AI  G     RW
Subjt:  LAKSIVGIMEIDVIEALAIWKGCIWQKRW

TXG48260.1 hypothetical protein EZV62_027554 [Acer yangbiense]2.1e-1038.84Show/hide
Query:  WCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKS
        W +W +RN+ +  N+      V EW +  +Y+  +R    R  D  K+   +  P WKPP    FKINTD ALN  +   GI VV+RN +G VM +L + 
Subjt:  WCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKS

Query:  IVGIMEIDVIEALAIWKGCIW
        I    +  +IEA+AI KG IW
Subjt:  IVGIMEIDVIEALAIWKGCIW

XP_030483626.1 uncharacterized protein LOC115700202 [Cannabis sativa]9.7e-0829.37Show/hide
Query:  WCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQ-PNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK
        W +W++RN    ++   V+  +  WT    Y+  +R     +         QA   +WKPP    FK+N D AL+      GIGV++RN  G+V   L+ 
Subjt:  WCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQ-PNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK

Query:  SIVGIMEIDVIEALAIWKGCIWQKRW
          +G  +   +EA A+  G  W K +
Subjt:  SIVGIMEIDVIEALAIWKGCIWQKRW

XP_030969909.1 uncharacterized protein LOC115990203 [Quercus lobata]5.1e-0931.71Show/hide
Query:  WCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKS
        W +WN RN     N  +  +C +     +  ++ ++E    S  ++K P     P W PP   ++K+NTD A+  + + CGIGVV+RNE+G++M  ++K+
Subjt:  WCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKS

Query:  I---VGIMEIDVIEALAIWKGCI
        +   +G++E   IEA A+ +G +
Subjt:  I---VGIMEIDVIEALAIWKGCI

TrEMBL top hitse value%identityAlignment
A0A2N9F7C1 Uncharacterized protein2.9e-1029.84Show/hide
Query:  CWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK
        CW +WN+RN D   +     +    WT  Q+ +  +   N   + ++  PP   Q  W+ P   ++K+N D A+ +++ + GIGVV+R+  G+V+ TL++
Subjt:  CWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK

Query:  SIVGIMEIDVIEALAIWKGCIWQK
         + G   +++IEALA  +  I+ +
Subjt:  SIVGIMEIDVIEALAIWKGCIWQK

A0A2N9GPD6 RNase H domain-containing protein2.9e-1029.84Show/hide
Query:  CWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK
        CW +WN+RN D   +     +    WT  Q+ +  +   N   + ++  PP   Q  W+ P   ++K+N D A+ +++ + GIGVV+R+  G+V+ TL++
Subjt:  CWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK

Query:  SIVGIMEIDVIEALAIWKGCIWQK
         + G   +++IEALA  +  I+ +
Subjt:  SIVGIMEIDVIEALAIWKGCIWQK

A0A2N9J3G2 Fe2OG dioxygenase domain-containing protein2.9e-1029.84Show/hide
Query:  CWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK
        CW +WN+RN D   +     +    WT  Q+ +  +   N   + ++  PP   Q  W+ P   ++K+N D A+ +++ + GIGVV+R+  G+V+ TL++
Subjt:  CWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK

Query:  SIVGIMEIDVIEALAIWKGCIWQK
         + G   +++IEALA  +  I+ +
Subjt:  SIVGIMEIDVIEALAIWKGCIWQK

A0A2N9J7E4 Uncharacterized protein3.8e-1031.45Show/hide
Query:  CWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK
        CW +WN+RN D     ++    +  WT  Q  +Q +       + +++ PP   Q  W+ P   ++K+N D A+ +E+ + GIGVV+R+  G  + TL++
Subjt:  CWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAK

Query:  SIVGIMEIDVIEALAIWKGCIWQK
         + GI  +++IEALA  +  I+ K
Subjt:  SIVGIMEIDVIEALAIWKGCIWQK

A0A5C7GUI2 RNase H domain-containing protein1.0e-1038.84Show/hide
Query:  WCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKS
        W +W +RN+ +  N+      V EW +  +Y+  +R    R  D  K+   +  P WKPP    FKINTD ALN  +   GI VV+RN +G VM +L + 
Subjt:  WCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKS

Query:  IVGIMEIDVIEALAIWKGCIW
        I    +  +IEA+AI KG IW
Subjt:  IVGIMEIDVIEALAIWKGCIW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.7e-0728.97Show/hide
Query:  MCWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPN----WKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVM
        + W +W  RN  +   K       +     +  ++ F E++ R + + K    Q + N    WK P Y + K NTD     EN  CGIG ++RNE G V+
Subjt:  MCWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPN----WKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVM

Query:  LTLAKSI
           A+++
Subjt:  LTLAKSI

AT4G29090.1 Ribonuclease H-like superfamily protein1.3e-0751.11Show/hide
Query:  WKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKSI
        W+PP + + K NTD   NR+N+ CGIG V+RNEKGEV    A+++
Subjt:  WKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGGTGTGTTTGGAATGAAAGAAATAGGGATTTGATTCTCAATAAGACTAATGTCAGAGAATGTGTTAATGAATGGACCTATTGCCAAACGTATATTCAACCGTT
TAGGGAATTTAATCTAAGAAGCCAAGACAAACAAAAAATACCCCCAATTCAGGCACAACCTAATTGGAAACCTCCTGGGTACCCTTTCTTCAAAATTAACACAGATGATG
CATTAAACAGAGAGAATCAAAATTGTGGAATAGGCGTGGTAGTCAGAAATGAAAAGGGAGAGGTGATGCTTACTCTAGCTAAGTCGATTGTTGGAATCATGGAAATTGAT
GTCATCGAAGCGCTGGCAATTTGGAAGGGTTGCATATGGCAAAAGAGATGGGATTCCGGCAGGTTGAGGTTGAGTCGGATTCGACCAAGGTCATTCAGCTCCTACAACAA
AATCGCCAAAACTTATCAGATCTGGGTCAGATTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGGTGTGTTTGGAATGAAAGAAATAGGGATTTGATTCTCAATAAGACTAATGTCAGAGAATGTGTTAATGAATGGACCTATTGCCAAACGTATATTCAACCGTT
TAGGGAATTTAATCTAAGAAGCCAAGACAAACAAAAAATACCCCCAATTCAGGCACAACCTAATTGGAAACCTCCTGGGTACCCTTTCTTCAAAATTAACACAGATGATG
CATTAAACAGAGAGAATCAAAATTGTGGAATAGGCGTGGTAGTCAGAAATGAAAAGGGAGAGGTGATGCTTACTCTAGCTAAGTCGATTGTTGGAATCATGGAAATTGAT
GTCATCGAAGCGCTGGCAATTTGGAAGGGTTGCATATGGCAAAAGAGATGGGATTCCGGCAGGTTGAGGTTGAGTCGGATTCGACCAAGGTCATTCAGCTCCTACAACAA
AATCGCCAAAACTTATCAGATCTGGGTCAGATTATAG
Protein sequenceShow/hide protein sequence
MCWCVWNERNRDLILNKTNVRECVNEWTYCQTYIQPFREFNLRSQDKQKIPPIQAQPNWKPPGYPFFKINTDDALNRENQNCGIGVVVRNEKGEVMLTLAKSIVGIMEID
VIEALAIWKGCIWQKRWDSGRLRLSRIRPRSFSSYNKIAKTYQIWVRL