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Tan0006208 (gene) of Snake gourd v1 genome

Gene IDTan0006208
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationLG03:68463365..68464751
RNA-Seq ExpressionTan0006208
SyntenyTan0006208
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0043186 - P granule (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR044641 - Sm-like protein Lsm7/SmG
IPR034098 - Small nuclear ribonucleoprotein G
IPR010920 - LSM domain superfamily
IPR001163 - LSM domain, eukaryotic/archaea-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595179.1 putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. sororia]2.3e-3497.5Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]6.1e-3598.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_012468163.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii]2.3e-3498.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV RMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_022962865.1 probable small nuclear ribonucleoprotein G [Cucurbita moschata]2.3e-3497.5Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_023517274.1 probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]8.0e-3598.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHH9 Small nuclear ribonucleoprotein G3.0e-3598.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A1S3CHS7 Small nuclear ribonucleoprotein G3.0e-3598.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A1U8LJV9 Small nuclear ribonucleoprotein G1.1e-3498.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV RMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A2P5STX6 Small nuclear ribonucleoprotein G1.1e-3498.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV RMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G3.0e-3598.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

SwissProt top hitse value%identityAlignment
O82221 Probable small nuclear ribonucleoprotein G6.4e-3593.59Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

P24715 Probable small nuclear ribonucleoprotein G3.3e-3189.47Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV
        MS SGQPP LKKYMDK+LQI L ANR++VGTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV

P62308 Small nuclear ribonucleoprotein G1.0e-1661.97Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G1.0e-1661.97Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q9VXE0 Probable small nuclear ribonucleoprotein G1.6e-1763.38Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV
        PP++KKYMDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+ V
Subjt:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein6.8e-0839.44Show/hide
Query:  DLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein6.8e-0839.44Show/hide
Query:  DLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G4.5e-3693.59Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

AT2G23930.2 probable small nuclear ribonucleoprotein G4.5e-2892.31Show/hide
Query:  MDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

AT3G11500.1 Small nuclear ribonucleoprotein family protein5.9e-3693.59Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIKLNANR+VVGTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGGTCGGGCCAGCCTCCAGATCTCAAAAAATACATGGACAAGAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCA
ATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAATGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTG
AACCTGTAAACAGGATGCAGTGA
mRNA sequenceShow/hide mRNA sequence
TTCTTCTCGATTAATTAGGGTTTTTCCATCTTTCTGACCTCTGTTCTCCCAAAACCTCTTCACATCTCTTTCTCTCGTTCTTCACCATGAGTAGGTCGGGCCAGCCTCCA
GATCTCAAAAAATACATGGACAAGAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAA
CACCGTGGAAGTGAATGGCAATGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGAT
GGGGAAGCGTTGGAATTTGGTTCAATTCTTGCTGATCTGTTTTATAGATTGAGTAAGACATTCAGTACTGTAGCATGTATAATTTTGGGATGTTTTGGATATTAGATGGA
ATTCTTCTACTCCATCATTCTGGACAGGCCGATTATAAATTTTAGCAATGGGGTTTCTGTATTATTCTAGAGAGATATTCGTTGCATTAGGTATAATTTTCCCACAAAAC
CTTTCATTCTCTCTGGCTACAGCACCAAGATCCAATTACATTGTACTCGAAGTATATGATTCTCAATCACTTTAAATTTGCACATTAATCTTACTATAAAAAATGCAGCT
CCATCTTCAA
Protein sequenceShow/hide protein sequence
MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ